Analysis of interatomic Contacts of Structural Units in PDB entry:
8WEX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WEX entry

There are 2 chains in PDB entry 8WEX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 37LEU 447
B
 LEU 37GLU 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8WEX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 92Right-handed alpha
Helix 2
AA2
A
93 109Right-handed alpha
Helix 3
AA3
A
124 137Right-handed alpha
Helix 4
AA4
A
153 165Right-handed alpha
Helix 5
AA5
A
176 192Right-handed alpha
Helix 6
AA6
A
195 213Right-handed alpha
Helix 7
AA7
A
259 267Right-handed alpha
Helix 8
AA8
A
270 277Right-handed 310
Helix 9
AA9
A
280 287Right-handed alpha
Helix 10
AB1
A
294 298Right-handed alpha
Helix 11
AB2
A
301 314Right-handed alpha
Helix 12
AB3
A
336 349Right-handed alpha
Helix 13
AB4
A
351 363Right-handed alpha
Helix 14
AB5
A
367 379Right-handed alpha
Helix 15
AB6
A
386 394Right-handed alpha
Helix 16
AB7
A
403 408Right-handed 310
Helix 17
AB8
A
414 424Right-handed alpha
Helix 18
AB9
B
79 92Right-handed alpha
Helix 19
AC1
B
93 109Right-handed alpha
Helix 20
AC2
B
124 137Right-handed alpha
Helix 21
AC3
B
153 165Right-handed alpha
Helix 22
AC4
B
176 192Right-handed alpha
Helix 23
AC5
B
195 213Right-handed alpha
Helix 24
AC6
B
236 242Right-handed alpha
Helix 25
AC7
B
259 267Right-handed alpha
Helix 26
AC8
B
270 277Right-handed 310
Helix 27
AC9
B
280 287Right-handed alpha
Helix 28
AD1
B
294 298Right-handed alpha
Helix 29
AD2
B
301 314Right-handed alpha
Helix 30
AD3
B
336 349Right-handed alpha
Helix 31
AD4
B
351 363Right-handed alpha
Helix 32
AD5
B
367 379Right-handed alpha
Helix 33
AD6
B
386 394Right-handed alpha
Helix 34
AD7
B
403 408Right-handed 310
Helix 35
AD8
B
414 424Right-handed alpha
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There are 7 sheets in PDB entry 8WEX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
142 147parallel
Strand 3
A
170 174parallel
Strand 4
B
170 174anti-parallel
Strand 5
B
142 147parallel
Strand 6
B
117 120parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
290 293parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
257 258anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 434first strand
Strand 2
A
437 440anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
290 293parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 254first strand
Strand 2
B
257 258anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
431 432first strand
Strand 2
B
439 440anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il