Analysis of interatomic Contacts of Structural Units in PDB entry:
8WF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WF4 entry

There are 2 chains in PDB entry 8WF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 416SER 708
B
 SER 415SER 708
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8WF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
456 467Right-handed alpha
Helix 2
AA2
A
496 502Right-handed alpha
Helix 3
AA3
A
508 529Right-handed alpha
Helix 4
AA4
A
549 551Right-handed 310
Helix 5
AA5
A
584 610Right-handed alpha
Helix 6
AA6
A
621 632Right-handed alpha
Helix 7
AA7
A
638 644Right-handed 310
Helix 8
AA8
A
645 656Right-handed alpha
Helix 9
AA9
A
659 663Right-handed 310
Helix 10
AB1
A
665 671Right-handed alpha
Helix 11
AB2
A
672 677Right-handed alpha
Helix 12
AB3
A
690 708Right-handed alpha
Helix 13
AB4
B
456 467Right-handed alpha
Helix 14
AB5
B
497 502Right-handed alpha
Helix 15
AB6
B
508 529Right-handed alpha
Helix 16
AB7
B
537 539Right-handed 310
Helix 17
AB8
B
549 551Right-handed 310
Helix 18
AB9
B
584 610Right-handed alpha
Helix 19
AC1
B
621 632Right-handed alpha
Helix 20
AC2
B
638 644Right-handed 310
Helix 21
AC3
B
645 656Right-handed alpha
Helix 22
AC4
B
659 663Right-handed 310
Helix 23
AC5
B
665 671Right-handed alpha
Helix 24
AC6
B
672 677Right-handed alpha
Helix 25
AC7
B
690 708Right-handed alpha
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There are 7 sheets in PDB entry 8WF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 427first strand
Strand 2
A
430 437anti-parallel
Strand 3
A
442 443anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 427first strand
Strand 2
A
430 437anti-parallel
Strand 3
A
445 450anti-parallel
Strand 4
A
484 489anti-parallel
Strand 5
A
475 480anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
562 563anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 543first strand
Strand 2
A
553 555anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 426first strand
Strand 2
B
430 437anti-parallel
Strand 3
B
442 450anti-parallel
Strand 4
B
484 490anti-parallel
Strand 5
B
475 480anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
495 496first strand
Strand 2
B
541 543anti-parallel
Strand 3
B
553 555anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
531 532first strand
Strand 2
B
562 563anti-parallel
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