Analysis of interatomic Contacts of Structural Units in PDB entry:
8WF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WF8 entry

There are 2 chains in PDB entry 8WF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 1090
B
 A -24 C 36
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 53 helices in PDB entry 8WF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 10Right-handed alpha
Helix 2
AA2
A
10 37Right-handed alpha
Helix 3
AA3
A
48 51Right-handed 310
Helix 4
AA4
A
52 61Right-handed alpha
Helix 5
AA5
A
68 83Right-handed alpha
Helix 6
AA6
A
84 102Right-handed alpha
Helix 7
AA7
A
109 132Right-handed alpha
Helix 8
AA8
A
138 142Right-handed 310
Helix 9
AA9
A
145 151Right-handed alpha
Helix 10
AB1
A
151 175Right-handed alpha
Helix 11
AB2
A
177 186Right-handed alpha
Helix 12
AB3
A
225 236Right-handed alpha
Helix 13
AB4
A
238 247Right-handed alpha
Helix 14
AB5
A
259 269Right-handed alpha
Helix 15
AB6
A
286 299Right-handed alpha
Helix 16
AB7
A
302 307Right-handed alpha
Helix 17
AB8
A
310 316Right-handed alpha
Helix 18
AB9
A
335 348Right-handed alpha
Helix 19
AC1
A
391 400Right-handed alpha
Helix 20
AC2
A
425 429Right-handed 310
Helix 21
AC3
A
482 494Right-handed alpha
Helix 22
AC4
A
494 518Right-handed alpha
Helix 23
AC5
A
525 530Right-handed 310
Helix 24
AC6
A
532 536Right-handed 310
Helix 25
AC7
A
537 546Right-handed alpha
Helix 26
AC8
A
552 583Right-handed alpha
Helix 27
AC9
A
598 613Right-handed alpha
Helix 28
AD1
A
617 621Right-handed 310
Helix 29
AD2
A
625 638Right-handed alpha
Helix 30
AD3
A
644 658Right-handed alpha
Helix 31
AD4
A
671 676Right-handed alpha
Helix 32
AD5
A
683 708Right-handed alpha
Helix 33
AD6
A
721 725Right-handed 310
Helix 34
AD7
A
728 739Right-handed alpha
Helix 35
AD8
A
749 759Right-handed alpha
Helix 36
AD9
A
760 764Right-handed 310
Helix 37
AE1
A
767 771Right-handed 310
Helix 38
AE2
A
772 784Right-handed alpha
Helix 39
AE3
A
790 794Right-handed 310
Helix 40
AE4
A
799 807Right-handed alpha
Helix 41
AE5
A
821 831Right-handed alpha
Helix 42
AE6
A
831 850Right-handed alpha
Helix 43
AE7
A
858 903Right-handed alpha
Helix 44
AE8
A
913 917Right-handed 310
Helix 45
AE9
A
924 927Right-handed 310
Helix 46
AF1
A
953 955Right-handed 310
Helix 47
AF2
A
956 963Right-handed alpha
Helix 48
AF3
A
966 975Right-handed alpha
Helix 49
AF4
A
981 1013Right-handed alpha
Helix 50
AF5
A
1013 1022Right-handed alpha
Helix 51
AF6
A
1027 1038Right-handed alpha
Helix 52
AF7
A
1042 1058Right-handed alpha
Helix 53
AF8
A
1074 1087Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8WF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
223 224anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
929 938anti-parallel
Strand 3
A
941 951anti-parallel
Strand 4
A
978 980parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 320first strand
Strand 2
A
326 328anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 389first strand
Strand 2
A
353 371anti-parallel
Strand 3
A
438 439anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
431 433parallel
Strand 3
A
353 371anti-parallel
Strand 4
A
445 450anti-parallel
Strand 5
A
476 479anti-parallel
Strand 6
A
742 743parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
468 470anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il