Analysis of interatomic Contacts of Structural Units in PDB entry:
8WFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WFB entry

There are 4 chains in PDB entry 8WFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 284THR 1490
B
 U -29 C 36
C
 A 0 U 22
C
 G 24 A 33
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8WFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
286 299Right-handed alpha
Helix 2
AA2
A
302 309Right-handed alpha
Helix 3
AA3
A
310 316Right-handed alpha
Helix 4
AA4
A
335 348Right-handed alpha
Helix 5
AA5
A
391 400Right-handed alpha
Helix 6
AA6
A
425 429Right-handed 310
Helix 7
AA7
A
482 494Right-handed alpha
Helix 8
AA8
A
494 518Right-handed alpha
Helix 9
AA9
A
525 530Right-handed 310
Helix 10
AB1
A
532 536Right-handed 310
Helix 11
AB2
A
537 546Right-handed alpha
Helix 12
AB3
A
552 578Right-handed alpha
Helix 13
AB4
A
599 613Right-handed alpha
Helix 14
AB5
A
617 621Right-handed 310
Helix 15
AB6
A
625 639Right-handed alpha
Helix 16
AB7
A
644 658Right-handed alpha
Helix 17
AB8
A
671 676Right-handed alpha
Helix 18
AB9
A
683 708Right-handed alpha
Helix 19
AC1
A
721 725Right-handed 310
Helix 20
AC2
A
728 739Right-handed alpha
Helix 21
AC3
A
749 760Right-handed alpha
Helix 22
AC4
A
761 764Right-handed 310
Helix 23
AC5
A
767 771Right-handed 310
Helix 24
AC6
A
772 784Right-handed alpha
Helix 25
AC7
A
790 794Right-handed 310
Helix 26
AC8
A
799 807Right-handed alpha
Helix 27
AC9
A
821 831Right-handed alpha
Helix 28
AD1
A
831 850Right-handed alpha
Helix 29
AD2
A
858 903Right-handed alpha
Helix 30
AD3
A
913 917Right-handed 310
Helix 31
AD4
A
1109 1129Right-handed alpha
Helix 32
AD5
A
1152 1154Right-handed 310
Helix 33
AD6
A
1169 1173Right-handed 310
Helix 34
AD7
A
1184 1207Right-handed alpha
Helix 35
AD8
A
1207 1214Right-handed alpha
Helix 36
AD9
A
1284 1287Right-handed 310
Helix 37
AE1
A
1291 1298Right-handed alpha
Helix 38
AE2
A
1305 1317Right-handed alpha
Helix 39
AE3
A
1319 1325Right-handed alpha
Helix 40
AE4
A
1342 1351Right-handed alpha
Helix 41
AE5
A
1352 1355Right-handed 310
Helix 42
AE6
A
1418 1433Right-handed alpha
Helix 43
AE7
A
1434 1438Right-handed 310
Helix 44
AE8
A
1447 1454Right-handed alpha
Helix 45
AE9
A
1455 1472Right-handed alpha
Helix 46
AF1
A
1481 1486Right-handed 310
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There are 7 sheets in PDB entry 8WFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 320first strand
Strand 2
A
326 328anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 389first strand
Strand 2
A
353 371anti-parallel
Strand 3
A
438 439anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
431 433parallel
Strand 3
A
353 371anti-parallel
Strand 4
A
445 450anti-parallel
Strand 5
A
476 479anti-parallel
Strand 6
A
742 743parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
468 470anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1370 1373first strand
Strand 2
A
1332 1337parallel
Strand 3
A
1231 1236parallel
Strand 4
A
1142 1148anti-parallel
Strand 5
A
1156 1163anti-parallel
Strand 6
A
1388 1393anti-parallel
Strand 7
A
1400 1403anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1216 1218first strand
Strand 2
A
1224 1226anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1280 1282first strand
Strand 2
A
1271 1274anti-parallel
Strand 3
A
1302 1304anti-parallel
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