Analysis of interatomic Contacts of Structural Units in PDB entry:
8WFC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WFC entry

There is 1 chain in PDB entry 8WFC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4ARG 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8WFC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 31Right-handed alpha
Helix 2
AA2
A
46 64Right-handed alpha
Helix 3
AA3
A
77 91Right-handed alpha
Helix 4
AA4
A
108 115Right-handed alpha
Helix 5
AA5
A
116 121Right-handed 310
Helix 6
AA6
A
126 136Right-handed alpha
Helix 7
AA7
A
142 155Right-handed alpha
Helix 8
AA8
A
173 182Right-handed alpha
Helix 9
AA9
A
201 207Right-handed alpha
Helix 10
AB1
A
223 227Right-handed 310
Helix 11
AB2
A
257 262Right-handed alpha
Helix 12
AB3
A
274 292Right-handed alpha
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There are 3 sheets in PDB entry 8WFC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
265 268parallel
Strand 3
A
231 235parallel
Strand 4
A
211 214parallel
Strand 5
A
163 167parallel
Strand 6
A
191 195parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 72first strand
Strand 2
A
37 43parallel
Strand 3
A
96 99parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
252 253anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il