Analysis of interatomic Contacts of Structural Units in PDB entry:
8WFD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WFD entry

There are 10 chains in PDB entry 8WFD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	GLU 3	SER 586
A	GLU 3	SER 586
B	GLU 3	SER 586
E	GLU 3	SER 586
D	GLU 3	SER 586
C	GLU 3	SER 586
H	LEU 11	ASP 372
G	LEU 11	ASP 372
I	G 1	A 12
J	T 8	C 19

There are187 helices in PDB entry 8WFD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	26	32	Right-handed alpha
Helix 2	AA2	F	67	79	Right-handed alpha
Helix 3	AA3	F	86	91	Right-handed alpha
Helix 4	AA4	F	121	123	Right-handed 310
Helix 5	AA5	F	131	141	Right-handed alpha
Helix 6	AA6	F	180	185	Right-handed alpha
Helix 7	AA7	F	198	214	Right-handed alpha
Helix 8	AA8	F	239	248	Right-handed alpha
Helix 9	AA9	F	259	271	Right-handed alpha
Helix 10	AB1	F	272	277	Right-handed 310
Helix 11	AB2	F	291	306	Right-handed alpha
Helix 12	AB3	F	311	325	Right-handed alpha
Helix 13	AB4	F	327	341	Right-handed alpha
Helix 14	AB5	F	362	373	Right-handed alpha
Helix 15	AB6	F	385	392	Right-handed alpha
Helix 16	AB7	F	393	402	Right-handed 310
Helix 17	AB8	F	410	421	Right-handed alpha
Helix 18	AB9	F	436	440	Right-handed 310
Helix 19	AC1	F	441	460	Right-handed alpha
Helix 20	AC2	F	475	478	Right-handed 310
Helix 21	AC3	F	484	497	Right-handed alpha
Helix 22	AC4	F	506	510	Right-handed 310
Helix 23	AC5	F	511	518	Right-handed alpha
Helix 24	AC6	F	528	539	Right-handed alpha
Helix 25	AC7	F	540	544	Right-handed 310
Helix 26	AC8	F	545	552	Right-handed alpha
Helix 27	AC9	F	576	585	Right-handed alpha
Helix 28	AD1	A	26	32	Right-handed alpha
Helix 29	AD2	A	67	78	Right-handed alpha
Helix 30	AD3	A	81	86	Right-handed alpha
Helix 31	AD4	A	86	92	Right-handed alpha
Helix 32	AD5	A	131	141	Right-handed alpha
Helix 33	AD6	A	180	185	Right-handed alpha
Helix 34	AD7	A	198	214	Right-handed alpha
Helix 35	AD8	A	239	248	Right-handed alpha
Helix 36	AD9	A	259	272	Right-handed alpha
Helix 37	AE1	A	273	277	Right-handed 310
Helix 38	AE2	A	291	306	Right-handed alpha
Helix 39	AE3	A	311	325	Right-handed alpha
Helix 40	AE4	A	327	342	Right-handed alpha
Helix 41	AE5	A	362	373	Right-handed alpha
Helix 42	AE6	A	385	392	Right-handed alpha
Helix 43	AE7	A	393	402	Right-handed 310
Helix 44	AE8	A	410	421	Right-handed alpha
Helix 45	AE9	A	436	440	Right-handed 310
Helix 46	AF1	A	441	460	Right-handed alpha
Helix 47	AF2	A	475	478	Right-handed 310
Helix 48	AF3	A	484	493	Right-handed alpha
Helix 49	AF4	A	506	510	Right-handed 310
Helix 50	AF5	A	511	516	Right-handed alpha
Helix 51	AF6	A	528	539	Right-handed alpha
Helix 52	AF7	A	540	544	Right-handed 310
Helix 53	AF8	A	545	552	Right-handed alpha
Helix 54	AF9	A	576	586	Right-handed alpha
Helix 55	AG1	B	26	32	Right-handed alpha
Helix 56	AG2	B	67	77	Right-handed alpha
Helix 57	AG3	B	86	94	Right-handed alpha
Helix 58	AG4	B	131	140	Right-handed alpha
Helix 59	AG5	B	180	185	Right-handed 310
Helix 60	AG6	B	198	214	Right-handed alpha
Helix 61	AG7	B	239	248	Right-handed alpha
Helix 62	AG8	B	259	272	Right-handed alpha
Helix 63	AG9	B	273	278	Right-handed 310
Helix 64	AH1	B	291	306	Right-handed alpha
Helix 65	AH2	B	311	325	Right-handed alpha
Helix 66	AH3	B	327	342	Right-handed alpha
Helix 67	AH4	B	362	373	Right-handed alpha
Helix 68	AH5	B	385	392	Right-handed alpha
Helix 69	AH6	B	393	401	Right-handed 310
Helix 70	AH7	B	410	421	Right-handed alpha
Helix 71	AH8	B	436	440	Right-handed 310
Helix 72	AH9	B	441	460	Right-handed alpha
Helix 73	AI1	B	484	493	Right-handed alpha
Helix 74	AI2	B	506	510	Right-handed 310
Helix 75	AI3	B	511	516	Right-handed alpha
Helix 76	AI4	B	528	539	Right-handed alpha
Helix 77	AI5	B	540	544	Right-handed 310
Helix 78	AI6	B	545	552	Right-handed alpha
Helix 79	AI7	B	576	585	Right-handed alpha
Helix 80	AI8	E	26	32	Right-handed alpha
Helix 81	AI9	E	67	78	Right-handed alpha
Helix 82	AJ1	E	86	94	Right-handed alpha
Helix 83	AJ2	E	131	140	Right-handed alpha
Helix 84	AJ3	E	180	185	Right-handed 310
Helix 85	AJ4	E	198	214	Right-handed alpha
Helix 86	AJ5	E	239	248	Right-handed alpha
Helix 87	AJ6	E	259	272	Right-handed alpha
Helix 88	AJ7	E	274	277	Right-handed 310
Helix 89	AJ8	E	291	306	Right-handed alpha
Helix 90	AJ9	E	311	325	Right-handed alpha
Helix 91	AK1	E	327	342	Right-handed alpha
Helix 92	AK2	E	362	375	Right-handed alpha
Helix 93	AK3	E	385	392	Right-handed alpha
Helix 94	AK4	E	393	402	Right-handed 310
Helix 95	AK5	E	410	421	Right-handed alpha
Helix 96	AK6	E	436	440	Right-handed 310
Helix 97	AK7	E	441	460	Right-handed alpha
Helix 98	AK8	E	475	480	Right-handed alpha
Helix 99	AK9	E	484	493	Right-handed alpha
Helix 100	AL1	E	494	496	Right-handed 310
Helix 101	AL2	E	506	510	Right-handed 310
Helix 102	AL3	E	511	517	Right-handed alpha
Helix 103	AL4	E	528	539	Right-handed alpha
Helix 104	AL5	E	540	544	Right-handed 310
Helix 105	AL6	E	545	552	Right-handed alpha
Helix 106	AL7	E	576	585	Right-handed alpha
Helix 107	AL8	D	26	32	Right-handed alpha
Helix 108	AL9	D	67	78	Right-handed alpha
Helix 109	AM1	D	86	91	Right-handed alpha
Helix 110	AM2	D	131	140	Right-handed alpha
Helix 111	AM3	D	180	184	Right-handed 310
Helix 112	AM4	D	198	214	Right-handed alpha
Helix 113	AM5	D	239	248	Right-handed alpha
Helix 114	AM6	D	259	272	Right-handed alpha
Helix 115	AM7	D	274	277	Right-handed 310
Helix 116	AM8	D	291	301	Right-handed alpha
Helix 117	AM9	D	311	325	Right-handed alpha
Helix 118	AN1	D	327	342	Right-handed alpha
Helix 119	AN2	D	362	373	Right-handed alpha
Helix 120	AN3	D	385	392	Right-handed alpha
Helix 121	AN4	D	393	403	Right-handed 310
Helix 122	AN5	D	410	421	Right-handed alpha
Helix 123	AN6	D	436	440	Right-handed 310
Helix 124	AN7	D	441	460	Right-handed alpha
Helix 125	AN8	D	475	480	Right-handed alpha
Helix 126	AN9	D	484	493	Right-handed alpha
Helix 127	AO1	D	494	496	Right-handed 310
Helix 128	AO2	D	506	510	Right-handed 310
Helix 129	AO3	D	511	517	Right-handed alpha
Helix 130	AO4	D	528	539	Right-handed alpha
Helix 131	AO5	D	540	544	Right-handed 310
Helix 132	AO6	D	545	552	Right-handed alpha
Helix 133	AO7	D	576	585	Right-handed alpha
Helix 134	AO8	C	26	32	Right-handed alpha
Helix 135	AO9	C	67	78	Right-handed alpha
Helix 136	AP1	C	131	140	Right-handed alpha
Helix 137	AP2	C	198	214	Right-handed alpha
Helix 138	AP3	C	239	248	Right-handed alpha
Helix 139	AP4	C	259	272	Right-handed alpha
Helix 140	AP5	C	274	277	Right-handed 310
Helix 141	AP6	C	291	303	Right-handed alpha
Helix 142	AP7	C	311	325	Right-handed alpha
Helix 143	AP8	C	327	342	Right-handed alpha
Helix 144	AP9	C	364	373	Right-handed alpha
Helix 145	AQ1	C	385	392	Right-handed alpha
Helix 146	AQ2	C	393	403	Right-handed 310
Helix 147	AQ3	C	410	421	Right-handed alpha
Helix 148	AQ4	C	436	440	Right-handed 310
Helix 149	AQ5	C	441	460	Right-handed alpha
Helix 150	AQ6	C	475	478	Right-handed 310
Helix 151	AQ7	C	484	493	Right-handed alpha
Helix 152	AQ8	C	494	496	Right-handed 310
Helix 153	AQ9	C	506	510	Right-handed 310
Helix 154	AR1	C	511	518	Right-handed alpha
Helix 155	AR2	C	528	539	Right-handed alpha
Helix 156	AR3	C	540	544	Right-handed 310
Helix 157	AR4	C	545	550	Right-handed alpha
Helix 158	AR5	C	576	586	Right-handed alpha
Helix 159	AR6	H	24	41	Right-handed alpha
Helix 160	AR7	H	110	117	Right-handed alpha
Helix 161	AR8	H	122	136	Right-handed alpha
Helix 162	AR9	H	149	173	Right-handed alpha
Helix 163	AS1	H	176	181	Right-handed 310
Helix 164	AS2	H	195	210	Right-handed alpha
Helix 165	AS3	H	227	234	Right-handed 310
Helix 166	AS4	H	248	263	Right-handed alpha
Helix 167	AS5	H	301	315	Right-handed alpha
Helix 168	AS6	H	325	335	Right-handed alpha
Helix 169	AS7	H	338	356	Right-handed alpha
Helix 170	AS8	H	357	371	Right-handed alpha
Helix 171	AS9	G	12	18	Right-handed 310
Helix 172	AT1	G	23	40	Right-handed alpha
Helix 173	AT2	G	72	75	Right-handed 310
Helix 174	AT3	G	88	90	Right-handed 310
Helix 175	AT4	G	101	106	Right-handed alpha
Helix 176	AT5	G	109	119	Right-handed alpha
Helix 177	AT6	G	122	136	Right-handed alpha
Helix 178	AT7	G	138	143	Right-handed 310
Helix 179	AT8	G	144	148	Right-handed 310
Helix 180	AT9	G	149	173	Right-handed alpha
Helix 181	AU1	G	195	210	Right-handed alpha
Helix 182	AU2	G	226	239	Right-handed alpha
Helix 183	AU3	G	248	263	Right-handed alpha
Helix 184	AU4	G	264	267	Right-handed 310
Helix 185	AU5	G	301	315	Right-handed alpha
Helix 186	AU6	G	325	335	Right-handed alpha
Helix 187	AU7	G	338	371	Right-handed alpha

There are 23 sheets in PDB entry 8WFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	15	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	96	107	anti-parallel
Strand 4	F	111	114	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	15	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	96	107	anti-parallel
Strand 4	F	49	59	anti-parallel
Strand 5	F	41	46	anti-parallel
Strand 6	F	125	129	anti-parallel

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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	178	first strand
Strand 2	F	158	163	anti-parallel
Strand 3	F	566	574	anti-parallel
Strand 4	F	557	562	anti-parallel
Strand 5	F	520	523	anti-parallel
Strand 6	F	188	192	parallel
Strand 7	F	498	503	parallel
Strand 8	F	468	473	parallel
Strand 9	F	218	223	parallel
Strand 10	F	430	434	parallel
Strand 11	F	253	257	parallel
Strand 12	F	279	283	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	350	353	first strand
Strand 2	F	356	359	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	15	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	96	105	anti-parallel
Strand 4	A	113	114	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	15	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	96	105	anti-parallel
Strand 4	A	49	59	anti-parallel
Strand 5	A	41	46	anti-parallel
Strand 6	A	125	129	anti-parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	178	first strand
Strand 2	A	158	163	anti-parallel
Strand 3	A	566	574	anti-parallel
Strand 4	A	557	562	anti-parallel
Strand 5	A	520	523	anti-parallel
Strand 6	A	188	192	parallel
Strand 7	A	498	503	parallel
Strand 8	A	468	473	parallel
Strand 9	A	218	223	parallel
Strand 10	A	430	434	parallel
Strand 11	A	253	257	parallel
Strand 12	A	279	283	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	15	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	96	107	anti-parallel
Strand 4	B	111	114	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	15	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	96	107	anti-parallel
Strand 4	B	49	59	anti-parallel
Strand 5	B	41	46	anti-parallel
Strand 6	B	126	129	anti-parallel

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There are 12 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	178	first strand
Strand 2	B	158	163	anti-parallel
Strand 3	B	566	574	anti-parallel
Strand 4	B	557	562	anti-parallel
Strand 5	B	520	523	anti-parallel
Strand 6	B	188	192	parallel
Strand 7	B	498	504	parallel
Strand 8	B	468	473	parallel
Strand 9	B	218	223	parallel
Strand 10	B	430	434	parallel
Strand 11	B	253	256	parallel
Strand 12	B	281	282	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	15	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	96	107	anti-parallel
Strand 4	E	111	114	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	15	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	96	107	anti-parallel
Strand 4	E	49	59	anti-parallel
Strand 5	E	41	46	anti-parallel
Strand 6	E	126	129	anti-parallel

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There are 12 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	179	first strand
Strand 2	E	157	163	anti-parallel
Strand 3	E	570	574	anti-parallel
Strand 4	E	557	562	anti-parallel
Strand 5	E	520	523	anti-parallel
Strand 6	E	188	192	parallel
Strand 7	E	498	503	parallel
Strand 8	E	468	473	parallel
Strand 9	E	218	223	parallel
Strand 10	E	430	434	parallel
Strand 11	E	253	257	parallel
Strand 12	E	279	283	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	351	353	first strand
Strand 2	E	356	358	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	15	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	96	107	anti-parallel
Strand 4	D	111	114	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	15	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	96	107	anti-parallel
Strand 4	D	50	59	anti-parallel
Strand 5	D	41	45	anti-parallel
Strand 6	D	126	129	anti-parallel

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There are 12 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	179	first strand
Strand 2	D	157	163	anti-parallel
Strand 3	D	570	574	anti-parallel
Strand 4	D	557	562	anti-parallel
Strand 5	D	520	523	anti-parallel
Strand 6	D	188	192	parallel
Strand 7	D	498	503	parallel
Strand 8	D	468	473	parallel
Strand 9	D	218	223	parallel
Strand 10	D	430	434	parallel
Strand 11	D	253	257	parallel
Strand 12	D	279	283	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	352	first strand
Strand 2	D	357	359	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	15	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	96	107	anti-parallel
Strand 4	C	111	114	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	15	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	96	107	anti-parallel
Strand 4	C	49	59	anti-parallel
Strand 5	C	41	46	anti-parallel
Strand 6	C	126	129	anti-parallel

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There are 12 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	179	first strand
Strand 2	C	157	163	anti-parallel
Strand 3	C	570	574	anti-parallel
Strand 4	C	557	562	anti-parallel
Strand 5	C	520	523	anti-parallel
Strand 6	C	188	192	parallel
Strand 7	C	498	503	parallel
Strand 8	C	468	473	parallel
Strand 9	C	218	223	parallel
Strand 10	C	430	434	parallel
Strand 11	C	253	256	parallel
Strand 12	C	279	282	parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	46	first strand
Strand 2	H	243	246	anti-parallel
Strand 3	H	274	279	anti-parallel
Strand 4	H	291	296	anti-parallel
Strand 5	H	213	217	anti-parallel
Strand 6	H	182	186	parallel
Strand 7	H	56	65	parallel
Strand 8	H	77	85	anti-parallel
Strand 9	H	94	100	anti-parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	46	first strand
Strand 2	G	243	246	anti-parallel
Strand 3	G	274	279	anti-parallel
Strand 4	G	291	296	anti-parallel
Strand 5	G	213	216	anti-parallel
Strand 6	G	182	186	parallel
Strand 7	G	56	65	parallel
Strand 8	G	77	86	anti-parallel
Strand 9	G	95	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WFD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WFD