Analysis of interatomic Contacts of Structural Units in PDB entry:
8WFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WFH entry

There are 2 chains in PDB entry 8WFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3PRO 195
E
 GLU 1LEU 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8WFH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 12Right-handed alpha
Helix 2
AA2
A
17 21Right-handed 310
Helix 3
AA3
A
33 38Right-handed alpha
Helix 4
AA4
A
51 58Right-handed 310
Helix 5
AA5
A
73 78Right-handed 310
Helix 6
AA6
A
84 90Right-handed alpha
Helix 7
AA7
A
106 111Right-handed alpha
Helix 8
AA8
A
170 173Right-handed 310
Helix 9
AA9
E
28 32Right-handed 310
Helix 10
AB1
E
62 65Right-handed 310
Helix 11
AB2
E
74 76Right-handed 310
Helix 12
AB3
E
87 91Right-handed 310
Helix 13
AB4
E
150 154Right-handed 310
Helix 14
AB5
E
203 207Right-handed 310
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There are 10 sheets in PDB entry 8WFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
62 71anti-parallel
Strand 3
A
175 184anti-parallel
Strand 4
A
99 105anti-parallel
Strand 5
A
44 48anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
192 193parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
160 162anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
156 157anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
116 120parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
34 40anti-parallel
Strand 5
E
44 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
116 120parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
109 112anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
131 134first strand
Strand 2
E
226 230parallel
Strand 3
E
209 215anti-parallel
Strand 4
E
157 162anti-parallel
Strand 5
E
169 172anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
131 134first strand
Strand 2
E
226 230parallel
Strand 3
E
209 215anti-parallel
Strand 4
E
221 223anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
140 145first strand
Strand 2
E
194 199anti-parallel
Strand 3
E
186 191anti-parallel
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