Analysis of interatomic Contacts of Structural Units in PDB entry:
8WFM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WFM entry

There are 8 chains in PDB entry 8WFM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	ALA 255
B	ASN 16	GLU 198
C	VAL 2	ALA 255
D	ASN 16	GLU 198
E	VAL 2	ALA 255
F	ASN 16	GLU 198
G	VAL 2	ALA 255
H	ASN 16	GLU 198

There are 41 helices in PDB entry 8WFM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	65	Right-handed 310
Helix 2	AA2	A	107	111	Right-handed 310
Helix 3	AA3	A	170	174	Right-handed 310
Helix 4	AA4	A	223	227	Right-handed 310
Helix 5	AA5	B	19	23	Right-handed 310
Helix 6	AA6	B	31	35	Right-handed 310
Helix 7	AA7	B	48	54	Right-handed alpha
Helix 8	AA8	B	86	90	Right-handed alpha
Helix 9	AA9	B	99	104	Right-handed alpha
Helix 10	AB1	B	120	125	Right-handed alpha
Helix 11	AB2	C	62	65	Right-handed 310
Helix 12	AB3	C	87	91	Right-handed 310
Helix 13	AB4	C	107	111	Right-handed 310
Helix 14	AB5	C	170	174	Right-handed 310
Helix 15	AB6	C	223	227	Right-handed 310
Helix 16	AB7	D	19	24	Right-handed alpha
Helix 17	AB8	D	31	35	Right-handed 310
Helix 18	AB9	D	48	54	Right-handed alpha
Helix 19	AC1	D	65	71	Right-handed alpha
Helix 20	AC2	D	87	92	Right-handed 310
Helix 21	AC3	D	98	104	Right-handed alpha
Helix 22	AC4	D	120	125	Right-handed alpha
Helix 23	AC5	E	62	65	Right-handed 310
Helix 24	AC6	E	87	91	Right-handed 310
Helix 25	AC7	E	107	111	Right-handed 310
Helix 26	AC8	E	223	227	Right-handed 310
Helix 27	AC9	F	31	35	Right-handed 310
Helix 28	AD1	F	47	54	Right-handed alpha
Helix 29	AD2	F	65	69	Right-handed 310
Helix 30	AD3	F	86	90	Right-handed alpha
Helix 31	AD4	F	99	104	Right-handed alpha
Helix 32	AD5	F	120	125	Right-handed alpha
Helix 33	AD6	G	87	91	Right-handed 310
Helix 34	AD7	G	107	111	Right-handed 310
Helix 35	AD8	G	170	174	Right-handed 310
Helix 36	AD9	G	223	227	Right-handed 310
Helix 37	AE1	H	31	35	Right-handed 310
Helix 38	AE2	H	48	54	Right-handed alpha
Helix 39	AE3	H	87	92	Right-handed 310
Helix 40	AE4	H	98	104	Right-handed alpha
Helix 41	AE5	H	120	125	Right-handed alpha

There are 38 sheets in PDB entry 8WFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	18	23	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	121	125	parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	59	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	121	125	parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	113	117	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	248	252	parallel
Strand 3	A	229	236	anti-parallel
Strand 4	A	178	182	anti-parallel
Strand 5	A	189	192	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	248	252	parallel
Strand 3	A	229	236	anti-parallel
Strand 4	A	241	244	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	165	first strand
Strand 2	A	214	219	anti-parallel
Strand 3	A	206	211	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	B	77	85	anti-parallel
Strand 3	B	189	197	anti-parallel
Strand 4	B	113	119	anti-parallel
Strand 5	B	58	62	anti-parallel
Strand 6	H	57	62	anti-parallel
Strand 7	H	113	119	anti-parallel
Strand 8	H	189	197	anti-parallel
Strand 9	H	77	85	anti-parallel
Strand 10	H	36	40	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	71	72	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	136	first strand
Strand 2	B	174	176	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	170	171	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	18	23	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	92	100	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	59	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	92	100	anti-parallel
Strand 4	C	113	117	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	248	252	parallel
Strand 3	C	228	236	anti-parallel
Strand 4	C	178	182	anti-parallel
Strand 5	C	189	192	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	248	252	parallel
Strand 3	C	228	236	anti-parallel
Strand 4	C	241	244	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	165	first strand
Strand 2	C	214	219	anti-parallel
Strand 3	C	206	211	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	40	first strand
Strand 2	D	77	85	anti-parallel
Strand 3	D	189	197	anti-parallel
Strand 4	D	113	119	anti-parallel
Strand 5	D	57	62	anti-parallel
Strand 6	F	58	62	anti-parallel
Strand 7	F	113	119	anti-parallel
Strand 8	F	189	197	anti-parallel
Strand 9	F	77	85	anti-parallel
Strand 10	F	36	40	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	174	176	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	156	first strand
Strand 2	D	170	171	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	22	23	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	122	125	parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	59	60	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	122	125	parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	113	117	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	20	first strand
Strand 2	E	78	84	anti-parallel
Strand 3	E	68	73	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	154	first strand
Strand 2	E	248	252	parallel
Strand 3	E	229	236	anti-parallel
Strand 4	E	178	182	anti-parallel
Strand 5	E	189	192	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	154	first strand
Strand 2	E	248	252	parallel
Strand 3	E	229	236	anti-parallel
Strand 4	E	241	244	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	165	first strand
Strand 2	E	214	219	anti-parallel
Strand 3	E	206	211	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	44	first strand
Strand 2	F	71	72	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	136	first strand
Strand 2	F	174	176	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	156	first strand
Strand 2	F	170	171	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	G	17	23	anti-parallel
Strand 3	G	78	84	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	121	125	parallel
Strand 3	G	92	100	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	46	51	anti-parallel
Strand 6	G	59	60	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	121	125	parallel
Strand 3	G	92	100	anti-parallel
Strand 4	G	113	117	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	154	first strand
Strand 2	G	248	252	parallel
Strand 3	G	228	236	anti-parallel
Strand 4	G	178	182	anti-parallel
Strand 5	G	189	192	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	154	first strand
Strand 2	G	248	252	parallel
Strand 3	G	228	236	anti-parallel
Strand 4	G	241	244	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	160	165	first strand
Strand 2	G	214	219	anti-parallel
Strand 3	G	206	211	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	44	first strand
Strand 2	H	71	72	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	174	176	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	156	first strand
Strand 2	H	170	171	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WFM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WFM