Analysis of interatomic Contacts of Structural Units in PDB entry:
8WFS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WFS entry

There are 7 chains in PDB entry 8WFS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
c
 CYS 1PRO 118
C
 CYS 1ALA 117
E
 THR 1ALA 125
B
 CYS 1ALA 140
b
 CYS 1ALA 140
X
 THR 1LEU 146
a
 ASP 482SER 503
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8WFS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
c
49 53Right-handed 310
Helix 2
AA2
c
69 71Right-handed 310
Helix 3
AA3
c
72 81Right-handed alpha
Helix 4
AA4
c
85 89Right-handed 310
Helix 5
AA5
c
96 100Right-handed 310
Helix 6
AA6
c
108 115Right-handed alpha
Helix 7
AA7
C
69 71Right-handed 310
Helix 8
AA8
C
72 81Right-handed alpha
Helix 9
AA9
C
96 100Right-handed 310
Helix 10
AB1
C
103 107Right-handed 310
Helix 11
AB2
C
108 115Right-handed alpha
Helix 12
AB3
E
74 76Right-handed 310
Helix 13
AB4
E
77 85Right-handed alpha
Helix 14
AB5
E
88 95Right-handed 310
Helix 15
AB6
B
69 71Right-handed 310
Helix 16
AB7
B
72 80Right-handed alpha
Helix 17
AB8
B
85 89Right-handed 310
Helix 18
AB9
B
96 100Right-handed 310
Helix 19
AC1
B
103 107Right-handed 310
Helix 20
AC2
B
108 117Right-handed alpha
Helix 21
AC3
B
125 140Right-handed alpha
Helix 22
AC4
b
49 53Right-handed 310
Helix 23
AC5
b
69 71Right-handed 310
Helix 24
AC6
b
72 81Right-handed alpha
Helix 25
AC7
b
96 100Right-handed 310
Helix 26
AC8
b
103 107Right-handed 310
Helix 27
AC9
b
108 116Right-handed alpha
Helix 28
AD1
b
125 140Right-handed alpha
Helix 29
AD2
X
74 76Right-handed 310
Helix 30
AD3
X
77 88Right-handed alpha
Helix 31
AD4
X
89 94Right-handed 310
Helix 32
AD5
X
130 146Right-handed alpha
Helix 33
AD6
a
483 503Right-handed alpha
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There are 11 sheets in PDB entry 8WFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
6 8first strand
Strand 2
c
11 13anti-parallel
Strand 3
c
34 36parallel
Strand 4
c
58 60parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
66 67first strand
Strand 2
c
93 95parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 8first strand
Strand 2
C
11 13anti-parallel
Strand 3
C
34 36parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
93 95parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 13first strand
Strand 2
E
17 21anti-parallel
Strand 3
E
39 41parallel
Strand 4
E
63 65parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
71 72first strand
Strand 2
E
97 99parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
11 13anti-parallel
Strand 3
B
34 36parallel
Strand 4
B
58 60parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
6 8first strand
Strand 2
b
11 13anti-parallel
Strand 3
b
34 36parallel
Strand 4
b
58 60parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
66 67first strand
Strand 2
b
93 95parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
9 13first strand
Strand 2
X
17 21anti-parallel
Strand 3
X
37 41parallel
Strand 4
X
63 65parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
71 72first strand
Strand 2
X
97 99parallel
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