Analysis of interatomic Contacts of Structural Units in PDB entry:
8WFX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WFX entry

There are 15 chains in PDB entry 8WFX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	MET 1	ALA 296
O	A 1	G 50
A	GLU 7	ASN 807
N	MET 1	GLU 375
E	TYR 8	SER 126
C	SER 2	THR 125
B	ASP 6	THR 125
D	ASP 7	THR 125
F	ASP 6	THR 125
I	TYR 5	VAL 236
J	THR 3	VAL 236
K	GLY 4	VAL 236
L	ALA 6	VAL 236
G	ALA 6	VAL 236
H	ALA 6	VAL 236

There are130 helices in PDB entry 8WFX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	31	37	Right-handed alpha
Helix 2	AA2	M	47	52	Right-handed alpha
Helix 3	AA3	M	86	94	Right-handed alpha
Helix 4	AA4	M	102	107	Right-handed alpha
Helix 5	AA5	M	119	123	Right-handed alpha
Helix 6	AA6	M	164	170	Right-handed alpha
Helix 7	AA7	M	170	176	Right-handed alpha
Helix 8	AA8	M	223	227	Right-handed 310
Helix 9	AA9	A	9	13	Right-handed 310
Helix 10	AB1	A	31	43	Right-handed alpha
Helix 11	AB2	A	67	72	Right-handed alpha
Helix 12	AB3	A	83	88	Right-handed alpha
Helix 13	AB4	A	95	112	Right-handed alpha
Helix 14	AB5	A	135	138	Right-handed 310
Helix 15	AB6	A	171	185	Right-handed alpha
Helix 16	AB7	A	197	206	Right-handed alpha
Helix 17	AB8	A	223	233	Right-handed alpha
Helix 18	AB9	A	233	245	Right-handed alpha
Helix 19	AC1	A	250	255	Right-handed alpha
Helix 20	AC2	A	256	259	Right-handed 310
Helix 21	AC3	A	276	281	Right-handed alpha
Helix 22	AC4	A	290	313	Right-handed alpha
Helix 23	AC5	A	337	358	Right-handed alpha
Helix 24	AC6	A	383	388	Right-handed alpha
Helix 25	AC7	A	391	397	Right-handed alpha
Helix 26	AC8	A	398	403	Right-handed alpha
Helix 27	AC9	A	414	422	Right-handed alpha
Helix 28	AD1	A	425	429	Right-handed 310
Helix 29	AD2	A	454	464	Right-handed alpha
Helix 30	AD3	A	501	505	Right-handed 310
Helix 31	AD4	A	539	544	Right-handed 310
Helix 32	AD5	A	562	566	Right-handed 310
Helix 33	AD6	A	581	586	Right-handed alpha
Helix 34	AD7	A	587	596	Right-handed alpha
Helix 35	AD8	A	599	606	Right-handed alpha
Helix 36	AD9	A	639	649	Right-handed alpha
Helix 37	AE1	A	650	653	Right-handed 310
Helix 38	AE2	A	675	679	Right-handed 310
Helix 39	AE3	A	682	690	Right-handed alpha
Helix 40	AE4	A	710	714	Right-handed alpha
Helix 41	AE5	A	721	729	Right-handed alpha
Helix 42	AE6	A	736	747	Right-handed alpha
Helix 43	AE7	A	754	764	Right-handed alpha
Helix 44	AE8	A	776	789	Right-handed alpha
Helix 45	AE9	A	791	807	Right-handed alpha
Helix 46	AF1	N	44	48	Right-handed 310
Helix 47	AF2	N	78	82	Right-handed 310
Helix 48	AF3	N	138	147	Right-handed alpha
Helix 49	AF4	N	149	154	Right-handed alpha
Helix 50	AF5	N	169	174	Right-handed alpha
Helix 51	AF6	N	175	178	Right-handed 310
Helix 52	AF7	N	215	219	Right-handed 310
Helix 53	AF8	N	269	273	Right-handed 310
Helix 54	AF9	N	335	339	Right-handed 310
Helix 55	AG1	E	9	16	Right-handed alpha
Helix 56	AG2	E	33	48	Right-handed alpha
Helix 57	AG3	E	56	61	Right-handed alpha
Helix 58	AG4	E	61	75	Right-handed alpha
Helix 59	AG5	E	77	88	Right-handed alpha
Helix 60	AG6	E	88	94	Right-handed alpha
Helix 61	AG7	E	95	97	Right-handed 310
Helix 62	AG8	E	100	115	Right-handed alpha
Helix 63	AG9	C	3	8	Right-handed alpha
Helix 64	AH1	C	9	14	Right-handed 310
Helix 65	AH2	C	30	32	Right-handed 310
Helix 66	AH3	C	33	38	Right-handed alpha
Helix 67	AH4	C	40	48	Right-handed alpha
Helix 68	AH5	C	56	61	Right-handed alpha
Helix 69	AH6	C	63	77	Right-handed alpha
Helix 70	AH7	C	80	85	Right-handed alpha
Helix 71	AH8	C	88	93	Right-handed alpha
Helix 72	AH9	C	100	120	Right-handed alpha
Helix 73	AI1	B	6	14	Right-handed 310
Helix 74	AI2	B	29	32	Right-handed 310
Helix 75	AI3	B	33	50	Right-handed alpha
Helix 76	AI4	B	56	61	Right-handed alpha
Helix 77	AI5	B	61	77	Right-handed alpha
Helix 78	AI6	B	79	88	Right-handed alpha
Helix 79	AI7	B	88	94	Right-handed alpha
Helix 80	AI8	B	99	120	Right-handed alpha
Helix 81	AI9	D	11	19	Right-handed alpha
Helix 82	AJ1	D	29	34	Right-handed 310
Helix 83	AJ2	D	39	48	Right-handed alpha
Helix 84	AJ3	D	61	76	Right-handed alpha
Helix 85	AJ4	D	79	88	Right-handed alpha
Helix 86	AJ5	D	88	95	Right-handed alpha
Helix 87	AJ6	D	102	120	Right-handed alpha
Helix 88	AJ7	F	7	16	Right-handed alpha
Helix 89	AJ8	F	29	34	Right-handed 310
Helix 90	AJ9	F	39	48	Right-handed alpha
Helix 91	AK1	F	56	61	Right-handed alpha
Helix 92	AK2	F	62	77	Right-handed alpha
Helix 93	AK3	F	77	88	Right-handed alpha
Helix 94	AK4	F	88	93	Right-handed alpha
Helix 95	AK5	F	94	98	Right-handed 310
Helix 96	AK6	F	99	120	Right-handed alpha
Helix 97	AK7	I	50	67	Right-handed alpha
Helix 98	AK8	I	81	89	Right-handed alpha
Helix 99	AK9	I	110	115	Right-handed alpha
Helix 100	AL1	I	175	193	Right-handed alpha
Helix 101	AL2	I	222	234	Right-handed alpha
Helix 102	AL3	J	50	59	Right-handed alpha
Helix 103	AL4	J	59	67	Right-handed alpha
Helix 104	AL5	J	81	89	Right-handed alpha
Helix 105	AL6	J	108	115	Right-handed alpha
Helix 106	AL7	J	173	193	Right-handed alpha
Helix 107	AL8	J	223	228	Right-handed alpha
Helix 108	AL9	J	228	236	Right-handed alpha
Helix 109	AM1	K	57	61	Right-handed 310
Helix 110	AM2	K	81	86	Right-handed alpha
Helix 111	AM3	K	108	115	Right-handed alpha
Helix 112	AM4	K	173	194	Right-handed alpha
Helix 113	AM5	K	222	234	Right-handed alpha
Helix 114	AM6	L	52	62	Right-handed alpha
Helix 115	AM7	L	76	80	Right-handed 310
Helix 116	AM8	L	81	88	Right-handed alpha
Helix 117	AM9	L	108	113	Right-handed alpha
Helix 118	AN1	L	176	190	Right-handed alpha
Helix 119	AN2	L	191	193	Right-handed 310
Helix 120	AN3	L	224	235	Right-handed alpha
Helix 121	AN4	G	51	63	Right-handed alpha
Helix 122	AN5	G	81	86	Right-handed alpha
Helix 123	AN6	G	109	115	Right-handed alpha
Helix 124	AN7	G	176	193	Right-handed alpha
Helix 125	AN8	G	225	235	Right-handed alpha
Helix 126	AN9	H	50	66	Right-handed alpha
Helix 127	AO1	H	81	89	Right-handed alpha
Helix 128	AO2	H	109	114	Right-handed alpha
Helix 129	AO3	H	173	193	Right-handed alpha
Helix 130	AO4	H	223	235	Right-handed alpha

There are 38 sheets in PDB entry 8WFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	58	60	first strand
Strand 2	M	160	163	anti-parallel
Strand 3	M	3	7	anti-parallel
Strand 4	M	195	197	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	12	13	first strand
Strand 2	M	149	151	anti-parallel
Strand 3	M	124	125	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	70	71	first strand
Strand 2	M	64	67	anti-parallel
Strand 3	M	155	158	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	73	74	first strand
Strand 2	M	97	98	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	128	132	first strand
Strand 2	M	143	147	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	213	214	first strand
Strand 2	M	294	295	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	242	243	first strand
Strand 2	M	253	254	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	276	277	first strand
Strand 2	M	287	288	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	147	148	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	333	first strand
Strand 2	A	266	269	anti-parallel
Strand 3	A	368	371	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	273	first strand
Strand 2	A	364	365	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	487	first strand
Strand 2	A	491	496	anti-parallel
Strand 3	A	474	478	anti-parallel
Strand 4	A	510	512	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	629	first strand
Strand 2	A	632	638	anti-parallel
Strand 3	A	553	560	anti-parallel
Strand 4	A	663	670	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	699	first strand
Strand 2	A	708	709	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	247	256	first strand
Strand 2	N	5	14	anti-parallel
Strand 3	N	371	372	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	99	100	first strand
Strand 2	I	151	156	anti-parallel
Strand 3	I	6	13	anti-parallel
Strand 4	I	213	219	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	16	first strand
Strand 2	I	207	208	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	121	123	first strand
Strand 2	I	142	144	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	10	first strand
Strand 2	J	214	219	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	149	151	first strand
Strand 2	J	13	16	anti-parallel
Strand 3	J	207	210	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	49	first strand
Strand 2	J	104	105	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	121	122	first strand
Strand 2	J	143	144	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	125	129	first strand
Strand 2	J	136	140	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	100	101	first strand
Strand 2	K	154	156	anti-parallel
Strand 3	K	8	16	anti-parallel
Strand 4	K	149	151	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	100	101	first strand
Strand 2	K	154	156	anti-parallel
Strand 3	K	8	16	anti-parallel
Strand 4	K	207	215	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	40	41	first strand
Strand 2	K	46	49	anti-parallel
Strand 3	K	104	105	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	124	129	first strand
Strand 2	K	136	141	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	99	100	first strand
Strand 2	L	152	157	anti-parallel
Strand 3	L	7	16	anti-parallel
Strand 4	L	207	210	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	99	100	first strand
Strand 2	L	152	157	anti-parallel
Strand 3	L	7	16	anti-parallel
Strand 4	L	215	218	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	121	123	first strand
Strand 2	L	142	144	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	126	128	first strand
Strand 2	L	137	139	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	101	first strand
Strand 2	G	152	156	anti-parallel
Strand 3	G	8	16	anti-parallel
Strand 4	G	207	210	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	49	first strand
Strand 2	G	104	105	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	126	first strand
Strand 2	G	139	142	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	155	first strand
Strand 2	H	8	16	anti-parallel
Strand 3	H	207	210	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	155	first strand
Strand 2	H	8	16	anti-parallel
Strand 3	H	215	216	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	49	first strand
Strand 2	H	104	105	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	126	first strand
Strand 2	H	139	140	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WFX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WFX