Analysis of interatomic Contacts of Structural Units in PDB entry:
8WFZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WFZ entry

There are 4 chains in PDB entry 8WFZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 58	LEU 713
B	ILE 58	LEU 713
C	ILE 58	LEU 713
D	ILE 58	LEU 713

There are127 helices in PDB entry 8WFZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	89	Right-handed alpha
Helix 2	AA2	A	94	115	Right-handed alpha
Helix 3	AA3	A	131	139	Right-handed alpha
Helix 4	AA4	A	142	151	Right-handed alpha
Helix 5	AA5	A	154	162	Right-handed alpha
Helix 6	AA6	A	164	169	Right-handed alpha
Helix 7	AA7	A	171	176	Right-handed alpha
Helix 8	AA8	A	178	191	Right-handed alpha
Helix 9	AA9	A	195	226	Right-handed alpha
Helix 10	AB1	A	228	233	Right-handed 310
Helix 11	AB2	A	253	270	Right-handed alpha
Helix 12	AB3	A	281	313	Right-handed alpha
Helix 13	AB4	A	314	333	Right-handed alpha
Helix 14	AB5	A	336	364	Right-handed alpha
Helix 15	AB6	A	367	384	Right-handed alpha
Helix 16	AB7	A	391	401	Right-handed alpha
Helix 17	AB8	A	455	462	Right-handed alpha
Helix 18	AB9	A	482	492	Right-handed alpha
Helix 19	AC1	A	492	510	Right-handed alpha
Helix 20	AC2	A	510	516	Right-handed alpha
Helix 21	AC3	A	516	542	Right-handed alpha
Helix 22	AC4	A	543	553	Right-handed alpha
Helix 23	AC5	A	566	575	Right-handed alpha
Helix 24	AC6	A	576	586	Right-handed alpha
Helix 25	AC7	A	599	608	Right-handed alpha
Helix 26	AC8	A	609	620	Right-handed alpha
Helix 27	AC9	A	627	639	Right-handed alpha
Helix 28	AD1	A	640	651	Right-handed alpha
Helix 29	AD2	A	663	672	Right-handed alpha
Helix 30	AD3	A	674	682	Right-handed alpha
Helix 31	AD4	A	696	705	Right-handed alpha
Helix 32	AD5	A	706	713	Right-handed alpha
Helix 33	AD6	B	62	90	Right-handed alpha
Helix 34	AD7	B	94	116	Right-handed alpha
Helix 35	AD8	B	131	142	Right-handed alpha
Helix 36	AD9	B	142	152	Right-handed alpha
Helix 37	AE1	B	153	161	Right-handed alpha
Helix 38	AE2	B	164	171	Right-handed alpha
Helix 39	AE3	B	172	177	Right-handed 310
Helix 40	AE4	B	178	187	Right-handed alpha
Helix 41	AE5	B	195	226	Right-handed alpha
Helix 42	AE6	B	235	239	Right-handed 310
Helix 43	AE7	B	253	270	Right-handed alpha
Helix 44	AE8	B	283	312	Right-handed alpha
Helix 45	AE9	B	314	333	Right-handed alpha
Helix 46	AF1	B	336	363	Right-handed alpha
Helix 47	AF2	B	367	376	Right-handed alpha
Helix 48	AF3	B	376	384	Right-handed alpha
Helix 49	AF4	B	391	401	Right-handed alpha
Helix 50	AF5	B	455	462	Right-handed alpha
Helix 51	AF6	B	482	492	Right-handed alpha
Helix 52	AF7	B	492	510	Right-handed alpha
Helix 53	AF8	B	516	541	Right-handed alpha
Helix 54	AF9	B	543	554	Right-handed alpha
Helix 55	AG1	B	566	575	Right-handed alpha
Helix 56	AG2	B	576	586	Right-handed alpha
Helix 57	AG3	B	600	607	Right-handed alpha
Helix 58	AG4	B	609	619	Right-handed alpha
Helix 59	AG5	B	627	639	Right-handed alpha
Helix 60	AG6	B	640	650	Right-handed alpha
Helix 61	AG7	B	663	672	Right-handed alpha
Helix 62	AG8	B	673	683	Right-handed alpha
Helix 63	AG9	B	684	688	Right-handed 310
Helix 64	AH1	B	696	705	Right-handed alpha
Helix 65	AH2	B	706	713	Right-handed alpha
Helix 66	AH3	C	62	89	Right-handed alpha
Helix 67	AH4	C	94	116	Right-handed alpha
Helix 68	AH5	C	131	142	Right-handed alpha
Helix 69	AH6	C	143	152	Right-handed alpha
Helix 70	AH7	C	153	162	Right-handed alpha
Helix 71	AH8	C	164	170	Right-handed alpha
Helix 72	AH9	C	171	177	Right-handed 310
Helix 73	AI1	C	178	191	Right-handed alpha
Helix 74	AI2	C	195	226	Right-handed alpha
Helix 75	AI3	C	240	244	Right-handed 310
Helix 76	AI4	C	253	270	Right-handed alpha
Helix 77	AI5	C	281	313	Right-handed alpha
Helix 78	AI6	C	314	334	Right-handed alpha
Helix 79	AI7	C	336	360	Right-handed alpha
Helix 80	AI8	C	365	383	Right-handed alpha
Helix 81	AI9	C	384	388	Right-handed 310
Helix 82	AJ1	C	391	401	Right-handed alpha
Helix 83	AJ2	C	455	462	Right-handed alpha
Helix 84	AJ3	C	481	492	Right-handed alpha
Helix 85	AJ4	C	492	510	Right-handed alpha
Helix 86	AJ5	C	519	542	Right-handed alpha
Helix 87	AJ6	C	543	553	Right-handed alpha
Helix 88	AJ7	C	566	575	Right-handed alpha
Helix 89	AJ8	C	576	587	Right-handed alpha
Helix 90	AJ9	C	599	608	Right-handed alpha
Helix 91	AK1	C	609	620	Right-handed alpha
Helix 92	AK2	C	627	639	Right-handed alpha
Helix 93	AK3	C	640	651	Right-handed alpha
Helix 94	AK4	C	663	672	Right-handed alpha
Helix 95	AK5	C	674	683	Right-handed alpha
Helix 96	AK6	C	696	705	Right-handed alpha
Helix 97	AK7	C	706	713	Right-handed alpha
Helix 98	AK8	D	62	88	Right-handed alpha
Helix 99	AK9	D	94	117	Right-handed alpha
Helix 100	AL1	D	131	152	Right-handed alpha
Helix 101	AL2	D	154	161	Right-handed alpha
Helix 102	AL3	D	164	171	Right-handed alpha
Helix 103	AL4	D	172	176	Right-handed 310
Helix 104	AL5	D	177	191	Right-handed alpha
Helix 105	AL6	D	195	226	Right-handed alpha
Helix 106	AL7	D	235	239	Right-handed 310
Helix 107	AL8	D	253	270	Right-handed alpha
Helix 108	AL9	D	281	312	Right-handed alpha
Helix 109	AM1	D	314	334	Right-handed alpha
Helix 110	AM2	D	336	362	Right-handed alpha
Helix 111	AM3	D	365	384	Right-handed alpha
Helix 112	AM4	D	391	400	Right-handed alpha
Helix 113	AM5	D	455	461	Right-handed alpha
Helix 114	AM6	D	482	492	Right-handed alpha
Helix 115	AM7	D	492	507	Right-handed alpha
Helix 116	AM8	D	510	541	Right-handed alpha
Helix 117	AM9	D	543	553	Right-handed alpha
Helix 118	AN1	D	566	575	Right-handed alpha
Helix 119	AN2	D	576	587	Right-handed alpha
Helix 120	AN3	D	599	608	Right-handed alpha
Helix 121	AN4	D	609	620	Right-handed alpha
Helix 122	AN5	D	627	639	Right-handed alpha
Helix 123	AN6	D	640	650	Right-handed alpha
Helix 124	AN7	D	663	672	Right-handed alpha
Helix 125	AN8	D	673	684	Right-handed alpha
Helix 126	AN9	D	696	705	Right-handed alpha
Helix 127	AO1	D	706	713	Right-handed alpha

There are 8 sheets in PDB entry 8WFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	406	first strand
Strand 2	A	476	481	anti-parallel
Strand 3	A	422	428	anti-parallel
Strand 4	A	452	454	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	448	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	467	471	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	407	first strand
Strand 2	B	475	481	anti-parallel
Strand 3	B	422	428	anti-parallel
Strand 4	B	452	454	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	448	first strand
Strand 2	B	431	434	anti-parallel
Strand 3	B	468	471	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	406	first strand
Strand 2	C	476	479	anti-parallel
Strand 3	C	424	428	anti-parallel
Strand 4	C	452	454	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	414	first strand
Strand 2	C	468	471	anti-parallel
Strand 3	C	431	436	anti-parallel
Strand 4	C	442	448	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	407	first strand
Strand 2	D	475	481	anti-parallel
Strand 3	D	422	428	anti-parallel
Strand 4	D	452	454	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	412	414	first strand
Strand 2	D	468	471	anti-parallel
Strand 3	D	431	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WFZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WFZ