Analysis of interatomic Contacts of Structural Units in PDB entry:
8WG5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WG5 entry

There are 12 chains in PDB entry 8WG5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	THR 194	LEU 823
A	LYS 37	ARG 134
B	ARG 23	GLY 101
C	ALA 10	THR 120
D	ARG 31	ALA 124
E	PRO 38	ARG 134
F	ARG 23	GLY 101
G	ALA 10	LYS 118
H	ARG 31	ALA 124
I	A -73	G 73
J	C -73	T 73
U	MET 1	CYS 76

There are 47 helices in PDB entry 8WG5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	204	216	Right-handed alpha
Helix 2	AA2	M	217	229	Right-handed alpha
Helix 3	AA3	M	255	270	Right-handed alpha
Helix 4	AA4	M	278	289	Right-handed alpha
Helix 5	AA5	M	290	293	Right-handed 310
Helix 6	AA6	M	299	328	Right-handed alpha
Helix 7	AA7	M	336	348	Right-handed alpha
Helix 8	AA8	M	354	358	Right-handed 310
Helix 9	AA9	M	632	641	Right-handed alpha
Helix 10	AB1	M	805	811	Right-handed alpha
Helix 11	AB2	A	44	57	Right-handed alpha
Helix 12	AB3	A	63	77	Right-handed alpha
Helix 13	AB4	A	85	114	Right-handed alpha
Helix 14	AB5	A	120	132	Right-handed alpha
Helix 15	AB6	B	25	29	Right-handed 310
Helix 16	AB7	B	30	41	Right-handed alpha
Helix 17	AB8	B	49	76	Right-handed alpha
Helix 18	AB9	B	82	93	Right-handed alpha
Helix 19	AC1	C	16	21	Right-handed alpha
Helix 20	AC2	C	27	37	Right-handed alpha
Helix 21	AC3	C	45	73	Right-handed alpha
Helix 22	AC4	C	79	90	Right-handed alpha
Helix 23	AC5	C	90	97	Right-handed alpha
Helix 24	AC6	D	37	49	Right-handed alpha
Helix 25	AC7	D	55	84	Right-handed alpha
Helix 26	AC8	D	90	102	Right-handed alpha
Helix 27	AC9	D	103	124	Right-handed alpha
Helix 28	AD1	E	44	55	Right-handed alpha
Helix 29	AD2	E	63	75	Right-handed alpha
Helix 30	AD3	E	85	114	Right-handed alpha
Helix 31	AD4	E	120	131	Right-handed alpha
Helix 32	AD5	F	24	29	Right-handed 310
Helix 33	AD6	F	30	42	Right-handed alpha
Helix 34	AD7	F	50	76	Right-handed alpha
Helix 35	AD8	F	82	92	Right-handed alpha
Helix 36	AD9	G	16	21	Right-handed alpha
Helix 37	AE1	G	27	37	Right-handed alpha
Helix 38	AE2	G	45	73	Right-handed alpha
Helix 39	AE3	G	79	90	Right-handed alpha
Helix 40	AE4	G	90	97	Right-handed alpha
Helix 41	AE5	H	37	49	Right-handed alpha
Helix 42	AE6	H	55	84	Right-handed alpha
Helix 43	AE7	H	90	102	Right-handed alpha
Helix 44	AE8	H	103	124	Right-handed alpha
Helix 45	AE9	U	22	34	Right-handed alpha
Helix 46	AF1	U	37	41	Right-handed 310
Helix 47	AF2	U	55	60	Right-handed 310

There are 16 sheets in PDB entry 8WG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	197	198	first strand
Strand 2	M	275	276	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	378	382	first strand
Strand 2	M	361	366	anti-parallel
Strand 3	M	683	688	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	385	387	first strand
Strand 2	M	692	697	parallel
Strand 3	M	814	821	anti-parallel
Strand 4	M	741	750	anti-parallel
Strand 5	M	719	721	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	385	387	first strand
Strand 2	M	692	697	parallel
Strand 3	M	814	821	anti-parallel
Strand 4	M	741	750	anti-parallel
Strand 5	M	759	764	anti-parallel
Strand 6	M	793	797	anti-parallel
Strand 7	M	800	803	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	700	703	first strand
Strand 2	M	706	709	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	53	54	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	88	89	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	53	54	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	12	16	first strand
Strand 2	U	2	6	anti-parallel
Strand 3	U	66	70	parallel
Strand 4	U	42	45	anti-parallel
Strand 5	U	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WG5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WG5