Analysis of interatomic Contacts of Structural Units in PDB entry:
8WGB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WGB entry

There are 5 chains in PDB entry 8WGB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLU 3	ASN 340
E	ALA 7	GLU 63
B	LYS 23	LYS 823
C	SER 6	TYR 354
R	ASN 41	ASN 852

There are 61 helices in PDB entry 8WGB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	3	26	Right-handed alpha
Helix 2	AA2	D	29	35	Right-handed alpha
Helix 3	AA3	E	8	26	Right-handed alpha
Helix 4	AA4	E	29	44	Right-handed alpha
Helix 5	AA5	B	58	75	Right-handed alpha
Helix 6	AA6	B	94	107	Right-handed alpha
Helix 7	AA7	B	144	156	Right-handed alpha
Helix 8	AA8	B	157	159	Right-handed 310
Helix 9	AA9	B	169	174	Right-handed 310
Helix 10	AB1	B	187	202	Right-handed alpha
Helix 11	AB2	B	214	231	Right-handed alpha
Helix 12	AB3	B	246	259	Right-handed alpha
Helix 13	AB4	B	277	281	Right-handed 310
Helix 14	AB5	B	324	333	Right-handed alpha
Helix 15	AB6	B	343	353	Right-handed alpha
Helix 16	AB7	B	377	400	Right-handed alpha
Helix 17	AB8	B	414	422	Right-handed alpha
Helix 18	AB9	B	482	485	Right-handed 310
Helix 19	AC1	B	565	592	Right-handed alpha
Helix 20	AC2	B	595	600	Right-handed alpha
Helix 21	AC3	B	603	624	Right-handed alpha
Helix 22	AC4	B	630	661	Right-handed alpha
Helix 23	AC5	B	675	701	Right-handed alpha
Helix 24	AC6	B	727	749	Right-handed alpha
Helix 25	AC7	B	754	758	Right-handed 310
Helix 26	AC8	B	759	784	Right-handed alpha
Helix 27	AC9	B	786	820	Right-handed alpha
Helix 28	AD1	C	8	33	Right-handed alpha
Helix 29	AD2	C	45	56	Right-handed alpha
Helix 30	AD3	C	207	212	Right-handed alpha
Helix 31	AD4	C	228	232	Right-handed 310
Helix 32	AD5	C	241	255	Right-handed alpha
Helix 33	AD6	C	270	279	Right-handed alpha
Helix 34	AD7	C	282	286	Right-handed 310
Helix 35	AD8	C	295	310	Right-handed alpha
Helix 36	AD9	C	330	351	Right-handed alpha
Helix 37	AE1	R	75	92	Right-handed alpha
Helix 38	AE2	R	111	120	Right-handed alpha
Helix 39	AE3	R	158	170	Right-handed alpha
Helix 40	AE4	R	183	188	Right-handed 310
Helix 41	AE5	R	201	216	Right-handed alpha
Helix 42	AE6	R	231	244	Right-handed alpha
Helix 43	AE7	R	263	275	Right-handed alpha
Helix 44	AE8	R	286	300	Right-handed alpha
Helix 45	AE9	R	324	329	Right-handed alpha
Helix 46	AF1	R	341	350	Right-handed alpha
Helix 47	AF2	R	361	371	Right-handed alpha
Helix 48	AF3	R	405	428	Right-handed alpha
Helix 49	AF4	R	435	439	Right-handed 310
Helix 50	AF5	R	442	453	Right-handed alpha
Helix 51	AF6	R	588	612	Right-handed alpha
Helix 52	AF7	R	615	621	Right-handed alpha
Helix 53	AF8	R	623	644	Right-handed alpha
Helix 54	AF9	R	649	685	Right-handed alpha
Helix 55	AG1	R	698	721	Right-handed alpha
Helix 56	AG2	R	749	774	Right-handed alpha
Helix 57	AG3	R	775	777	Right-handed 310
Helix 58	AG4	R	778	782	Right-handed 310
Helix 59	AG5	R	783	806	Right-handed alpha
Helix 60	AG6	R	807	811	Right-handed 310
Helix 61	AG7	R	816	848	Right-handed alpha

There are 18 sheets in PDB entry 8WGB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	51	first strand
Strand 2	D	336	340	anti-parallel
Strand 3	D	327	331	anti-parallel
Strand 4	D	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	79	83	anti-parallel
Strand 4	D	88	93	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	105	first strand
Strand 2	D	111	114	anti-parallel
Strand 3	D	120	125	anti-parallel
Strand 4	D	134	135	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	105	first strand
Strand 2	D	111	114	anti-parallel
Strand 3	D	120	125	anti-parallel
Strand 4	D	139	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	153	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	166	170	anti-parallel
Strand 4	D	176	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	208	212	anti-parallel
Strand 4	D	218	222	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	234	first strand
Strand 2	D	240	245	anti-parallel
Strand 3	D	251	254	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	294	298	anti-parallel
Strand 4	D	304	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	86	90	anti-parallel
Strand 3	B	34	38	parallel
Strand 4	B	139	141	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	181	183	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	241	first strand
Strand 2	B	206	212	parallel
Strand 3	B	265	268	parallel
Strand 4	B	292	293	parallel
Strand 5	B	315	319	parallel
Strand 6	B	453	459	anti-parallel
Strand 7	B	467	474	anti-parallel
Strand 8	B	478	480	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	511	first strand
Strand 2	B	521	524	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	533	first strand
Strand 2	B	536	538	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	546	first strand
Strand 2	B	553	555	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	189	first strand
Strand 2	C	196	200	anti-parallel
Strand 3	C	34	40	parallel
Strand 4	C	220	226	parallel
Strand 5	C	264	269	parallel
Strand 6	C	319	323	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	101	105	first strand
Strand 2	R	49	53	parallel
Strand 3	R	150	154	parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	250	256	first strand
Strand 2	R	221	226	parallel
Strand 3	R	280	284	parallel
Strand 4	R	307	310	parallel
Strand 5	R	332	336	parallel
Strand 6	R	475	480	anti-parallel
Strand 7	R	489	495	anti-parallel
Strand 8	R	500	501	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	564	565	first strand
Strand 2	R	574	575	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WGB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WGB