Analysis of interatomic Contacts of Structural Units in PDB entry:
8WGC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WGC entry

There are 2 chains in PDB entry 8WGC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	LYS 23	LYS 823
A	MET 40	GLN 851

There are 67 helices in PDB entry 8WGC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	58	75	Right-handed alpha
Helix 2	AA2	D	94	102	Right-handed alpha
Helix 3	AA3	D	103	106	Right-handed 310
Helix 4	AA4	D	144	155	Right-handed alpha
Helix 5	AA5	D	156	159	Right-handed 310
Helix 6	AA6	D	169	174	Right-handed 310
Helix 7	AA7	D	188	202	Right-handed alpha
Helix 8	AA8	D	214	231	Right-handed alpha
Helix 9	AA9	D	246	258	Right-handed alpha
Helix 10	AB1	D	273	278	Right-handed alpha
Helix 11	AB2	D	279	281	Right-handed 310
Helix 12	AB3	D	300	304	Right-handed 310
Helix 13	AB4	D	324	333	Right-handed alpha
Helix 14	AB5	D	344	353	Right-handed alpha
Helix 15	AB6	D	377	400	Right-handed alpha
Helix 16	AB7	D	414	422	Right-handed alpha
Helix 17	AB8	D	482	485	Right-handed 310
Helix 18	AB9	D	568	587	Right-handed alpha
Helix 19	AC1	D	588	594	Right-handed alpha
Helix 20	AC2	D	595	599	Right-handed 310
Helix 21	AC3	D	600	621	Right-handed alpha
Helix 22	AC4	D	628	633	Right-handed alpha
Helix 23	AC5	D	641	661	Right-handed alpha
Helix 24	AC6	D	675	696	Right-handed alpha
Helix 25	AC7	D	697	700	Right-handed 310
Helix 26	AC8	D	724	730	Right-handed alpha
Helix 27	AC9	D	735	749	Right-handed alpha
Helix 28	AD1	D	754	756	Right-handed 310
Helix 29	AD2	D	757	775	Right-handed alpha
Helix 30	AD3	D	776	784	Right-handed alpha
Helix 31	AD4	D	786	820	Right-handed alpha
Helix 32	AD5	A	75	92	Right-handed alpha
Helix 33	AD6	A	111	120	Right-handed alpha
Helix 34	AD7	A	120	125	Right-handed alpha
Helix 35	AD8	A	158	171	Right-handed alpha
Helix 36	AD9	A	183	187	Right-handed 310
Helix 37	AE1	A	202	216	Right-handed alpha
Helix 38	AE2	A	228	246	Right-handed alpha
Helix 39	AE3	A	263	273	Right-handed alpha
Helix 40	AE4	A	274	276	Right-handed 310
Helix 41	AE5	A	286	300	Right-handed alpha
Helix 42	AE6	A	318	322	Right-handed 310
Helix 43	AE7	A	324	329	Right-handed alpha
Helix 44	AE8	A	341	349	Right-handed alpha
Helix 45	AE9	A	350	351	Right-handed 310
Helix 46	AF1	A	352	356	Right-handed 310
Helix 47	AF2	A	361	370	Right-handed alpha
Helix 48	AF3	A	405	428	Right-handed alpha
Helix 49	AF4	A	435	439	Right-handed 310
Helix 50	AF5	A	442	452	Right-handed alpha
Helix 51	AF6	A	503	506	Right-handed 310
Helix 52	AF7	A	585	612	Right-handed alpha
Helix 53	AF8	A	615	620	Right-handed alpha
Helix 54	AF9	A	622	641	Right-handed alpha
Helix 55	AG1	A	642	645	Right-handed 310
Helix 56	AG2	A	648	653	Right-handed alpha
Helix 57	AG3	A	656	683	Right-handed alpha
Helix 58	AG4	A	684	686	Right-handed 310
Helix 59	AG5	A	695	721	Right-handed alpha
Helix 60	AG6	A	729	733	Right-handed 310
Helix 61	AG7	A	736	740	Right-handed 310
Helix 62	AG8	A	751	772	Right-handed alpha
Helix 63	AG9	A	773	777	Right-handed 310
Helix 64	AH1	A	778	783	Right-handed 310
Helix 65	AH2	A	784	806	Right-handed alpha
Helix 66	AH3	A	813	838	Right-handed alpha
Helix 67	AH4	A	838	848	Right-handed alpha

There are 16 sheets in PDB entry 8WGC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	27	first strand
Strand 2	D	87	90	anti-parallel
Strand 3	D	36	38	parallel
Strand 4	D	139	141	parallel
Strand 5	D	162	164	parallel
Strand 6	D	181	183	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	84	85	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	43	first strand
Strand 2	D	50	53	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	241	first strand
Strand 2	D	206	212	parallel
Strand 3	D	265	268	parallel
Strand 4	D	290	293	parallel
Strand 5	D	315	319	parallel
Strand 6	D	453	459	anti-parallel
Strand 7	D	467	474	anti-parallel
Strand 8	D	478	480	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	508	511	first strand
Strand 2	D	521	524	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	533	first strand
Strand 2	D	536	538	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	544	546	first strand
Strand 2	D	553	555	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	101	107	anti-parallel
Strand 3	A	49	55	parallel
Strand 4	A	150	154	parallel
Strand 5	A	176	178	parallel
Strand 6	A	195	197	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	67	70	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	256	first strand
Strand 2	A	220	226	parallel
Strand 3	A	280	284	parallel
Strand 4	A	307	310	parallel
Strand 5	A	332	336	parallel
Strand 6	A	474	483	anti-parallel
Strand 7	A	486	496	anti-parallel
Strand 8	A	499	501	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	A	386	387	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	456	first strand
Strand 2	A	462	463	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	533	first strand
Strand 2	A	536	544	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	553	first strand
Strand 2	A	556	559	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	566	first strand
Strand 2	A	573	575	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	578	579	first strand
Strand 2	A	742	746	parallel
Strand 3	A	725	728	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WGC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WGC