Analysis of interatomic Contacts of Structural Units in PDB entry:
8WGD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WGD entry

There are 2 chains in PDB entry 8WGD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LYS 23	PHE 819
B	ILE 43	HIS 848

There are 60 helices in PDB entry 8WGD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	58	75	Right-handed alpha
Helix 2	AA2	C	94	109	Right-handed alpha
Helix 3	AA3	C	144	156	Right-handed alpha
Helix 4	AA4	C	157	159	Right-handed 310
Helix 5	AA5	C	174	179	Right-handed alpha
Helix 6	AA6	C	188	202	Right-handed alpha
Helix 7	AA7	C	214	231	Right-handed alpha
Helix 8	AA8	C	242	244	Right-handed 310
Helix 9	AA9	C	245	259	Right-handed alpha
Helix 10	AB1	C	271	285	Right-handed alpha
Helix 11	AB2	C	295	298	Right-handed 310
Helix 12	AB3	C	300	311	Right-handed 310
Helix 13	AB4	C	324	333	Right-handed alpha
Helix 14	AB5	C	344	353	Right-handed alpha
Helix 15	AB6	C	366	370	Right-handed 310
Helix 16	AB7	C	375	400	Right-handed alpha
Helix 17	AB8	C	407	411	Right-handed 310
Helix 18	AB9	C	414	419	Right-handed alpha
Helix 19	AC1	C	482	485	Right-handed 310
Helix 20	AC2	C	564	568	Right-handed 310
Helix 21	AC3	C	570	578	Right-handed alpha
Helix 22	AC4	C	579	583	Right-handed 310
Helix 23	AC5	C	584	593	Right-handed alpha
Helix 24	AC6	C	599	604	Right-handed alpha
Helix 25	AC7	C	607	626	Right-handed alpha
Helix 26	AC8	C	628	638	Right-handed alpha
Helix 27	AC9	C	638	661	Right-handed alpha
Helix 28	AD1	C	676	701	Right-handed alpha
Helix 29	AD2	C	726	747	Right-handed alpha
Helix 30	AD3	C	758	781	Right-handed alpha
Helix 31	AD4	C	789	810	Right-handed alpha
Helix 32	AD5	C	810	818	Right-handed alpha
Helix 33	AD6	B	74	90	Right-handed alpha
Helix 34	AD7	B	111	126	Right-handed alpha
Helix 35	AD8	B	158	170	Right-handed alpha
Helix 36	AD9	B	183	188	Right-handed 310
Helix 37	AE1	B	201	216	Right-handed alpha
Helix 38	AE2	B	228	246	Right-handed alpha
Helix 39	AE3	B	263	273	Right-handed alpha
Helix 40	AE4	B	286	300	Right-handed alpha
Helix 41	AE5	B	318	322	Right-handed 310
Helix 42	AE6	B	324	329	Right-handed alpha
Helix 43	AE7	B	341	346	Right-handed alpha
Helix 44	AE8	B	357	370	Right-handed alpha
Helix 45	AE9	B	404	428	Right-handed alpha
Helix 46	AF1	B	442	452	Right-handed alpha
Helix 47	AF2	B	503	506	Right-handed 310
Helix 48	AF3	B	585	612	Right-handed alpha
Helix 49	AF4	B	615	620	Right-handed alpha
Helix 50	AF5	B	623	645	Right-handed alpha
Helix 51	AF6	B	648	684	Right-handed alpha
Helix 52	AF7	B	696	721	Right-handed alpha
Helix 53	AF8	B	729	733	Right-handed 310
Helix 54	AF9	B	736	740	Right-handed 310
Helix 55	AG1	B	750	755	Right-handed alpha
Helix 56	AG2	B	755	776	Right-handed alpha
Helix 57	AG3	B	784	800	Right-handed alpha
Helix 58	AG4	B	801	808	Right-handed alpha
Helix 59	AG5	B	813	838	Right-handed alpha
Helix 60	AG6	B	838	847	Right-handed alpha

There are 13 sheets in PDB entry 8WGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	84	88	anti-parallel
Strand 3	C	32	37	parallel
Strand 4	C	139	141	parallel
Strand 5	C	162	164	parallel
Strand 6	C	181	183	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	241	first strand
Strand 2	C	206	212	parallel
Strand 3	C	265	269	parallel
Strand 4	C	290	293	parallel
Strand 5	C	315	319	parallel
Strand 6	C	453	459	anti-parallel
Strand 7	C	467	473	anti-parallel
Strand 8	C	479	480	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	512	first strand
Strand 2	C	521	524	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	529	533	first strand
Strand 2	C	536	539	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	544	546	first strand
Strand 2	C	553	555	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	107	first strand
Strand 2	B	51	55	parallel
Strand 3	B	152	155	parallel
Strand 4	B	176	178	parallel
Strand 5	B	195	197	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	65	70	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	256	first strand
Strand 2	B	221	226	parallel
Strand 3	B	280	284	parallel
Strand 4	B	307	310	parallel
Strand 5	B	332	336	parallel
Strand 6	B	475	483	anti-parallel
Strand 7	B	486	495	anti-parallel
Strand 8	B	499	501	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	456	first strand
Strand 2	B	462	464	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	533	first strand
Strand 2	B	536	544	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	549	553	first strand
Strand 2	B	556	559	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	566	first strand
Strand 2	B	573	575	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	578	579	first strand
Strand 2	B	742	746	parallel
Strand 3	B	725	727	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WGD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WGD