Analysis of interatomic Contacts of Structural Units in PDB entry:
8WGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WGP entry

There are 4 chains in PDB entry 8WGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4PHE 65
A
 SER 69GLY 223
B
 THR 4PHE 65
B
 SER 69GLY 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8WGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 65Right-handed 310
Helix 2
AA2
A
69 73Right-handed 310
Helix 3
AA3
A
81 86Right-handed alpha
Helix 4
AA4
B
37 39Right-handed 310
Helix 5
AA5
B
57 65Right-handed 310
Helix 6
AA6
B
81 86Right-handed alpha
Helix 7
AA7
B
133 138Right-handed alpha
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There are 3 sheets in PDB entry 8WGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 22first strand
Strand 2
A
25 36anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
210 220anti-parallel
Strand 5
A
193 204anti-parallel
Strand 6
A
146 152anti-parallel
Strand 7
A
157 161anti-parallel
Strand 8
A
177 183anti-parallel
Strand 9
A
91 98anti-parallel
Strand 10
A
104 114anti-parallel
Strand 11
A
117 127anti-parallel
Strand 12
A
12 22parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
164 167anti-parallel
Strand 3
A
172 174anti-parallel
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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 143first strand
Strand 2
B
156 167anti-parallel
Strand 3
B
174 183anti-parallel
Strand 4
B
91 99anti-parallel
Strand 5
B
104 114anti-parallel
Strand 6
B
117 127anti-parallel
Strand 7
B
12 22parallel
Strand 8
B
25 36anti-parallel
Strand 9
B
41 47anti-parallel
Strand 10
B
210 220anti-parallel
Strand 11
B
193 204anti-parallel
Strand 12
B
146 153anti-parallel
Strand 13
B
156 167anti-parallel
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