Analysis of interatomic Contacts of Structural Units in PDB entry:
8WH5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WH5 entry

There are 11 chains in PDB entry 8WH5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 41	ARG 134
B	ASN 25	GLY 101
C	LYS 21	VAL 108
D	THR 61	SER 149
E	GLU 50	ARG 134
F	GLY 14	PHE 100
G	ARG 18	LEU 116
H	SER 58	SER 149
I	T 2	T 134
J	A 14	A 146
K	GLY 199	GLY 674

There are 55 helices in PDB entry 8WH5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	79	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	25	29	Right-handed 310
Helix 6	AA6	B	30	42	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	84	93	Right-handed alpha
Helix 9	AA9	C	27	37	Right-handed alpha
Helix 10	AB1	C	38	40	Right-handed 310
Helix 11	AB2	C	46	75	Right-handed alpha
Helix 12	AB3	C	80	91	Right-handed alpha
Helix 13	AB4	C	93	98	Right-handed alpha
Helix 14	AB5	D	62	74	Right-handed alpha
Helix 15	AB6	D	80	108	Right-handed alpha
Helix 16	AB7	D	115	127	Right-handed alpha
Helix 17	AB8	D	129	149	Right-handed alpha
Helix 18	AB9	E	51	55	Right-handed alpha
Helix 19	AC1	E	64	77	Right-handed alpha
Helix 20	AC2	E	87	114	Right-handed alpha
Helix 21	AC3	E	120	131	Right-handed alpha
Helix 22	AC4	F	24	29	Right-handed 310
Helix 23	AC5	F	30	40	Right-handed alpha
Helix 24	AC6	F	50	75	Right-handed alpha
Helix 25	AC7	F	82	92	Right-handed alpha
Helix 26	AC8	G	27	38	Right-handed alpha
Helix 27	AC9	G	46	75	Right-handed alpha
Helix 28	AD1	G	80	91	Right-handed alpha
Helix 29	AD2	G	92	98	Right-handed alpha
Helix 30	AD3	H	62	74	Right-handed alpha
Helix 31	AD4	H	83	109	Right-handed alpha
Helix 32	AD5	H	115	126	Right-handed alpha
Helix 33	AD6	H	129	148	Right-handed alpha
Helix 34	AD7	K	207	220	Right-handed alpha
Helix 35	AD8	K	233	245	Right-handed alpha
Helix 36	AD9	K	246	249	Right-handed 310
Helix 37	AE1	K	258	269	Right-handed alpha
Helix 38	AE2	K	285	294	Right-handed alpha
Helix 39	AE3	K	310	317	Right-handed alpha
Helix 40	AE4	K	317	323	Right-handed alpha
Helix 41	AE5	K	334	339	Right-handed 310
Helix 42	AE6	K	343	352	Right-handed alpha
Helix 43	AE7	K	369	380	Right-handed alpha
Helix 44	AE8	K	416	425	Right-handed alpha
Helix 45	AE9	K	453	465	Right-handed alpha
Helix 46	AF1	K	467	474	Right-handed alpha
Helix 47	AF2	K	488	499	Right-handed alpha
Helix 48	AF3	K	500	508	Right-handed alpha
Helix 49	AF4	K	519	522	Right-handed 310
Helix 50	AF5	K	523	536	Right-handed alpha
Helix 51	AF6	K	550	564	Right-handed alpha
Helix 52	AF7	K	575	587	Right-handed alpha
Helix 53	AF8	K	604	608	Right-handed 310
Helix 54	AF9	K	623	635	Right-handed alpha
Helix 55	AG1	K	653	674	Right-handed alpha

There are 9 sheets in PDB entry 8WH5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	E	83	84	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	D	113	114	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	D	78	79	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	98	first strand
Strand 2	G	102	103	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	44	first strand
Strand 2	H	113	114	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	278	280	first strand
Strand 2	K	306	309	parallel
Strand 3	K	253	256	parallel
Strand 4	K	329	332	parallel
Strand 5	K	357	359	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	444	450	first strand
Strand 2	K	644	650	parallel
Strand 3	K	614	617	parallel
Strand 4	K	543	546	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	568	570	first strand
Strand 2	K	596	598	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WH5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WH5