Analysis of interatomic Contacts of Structural Units in PDB entry:
8WH9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WH9 entry

There are 11 chains in PDB entry 8WH9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 41	GLU 133
B	ARG 23	GLY 101
C	ALA 15	LEU 116
D	THR 61	SER 149
E	PRO 38	ALA 135
F	ARG 17	PHE 100
G	ARG 18	LEU 116
H	SER 58	SER 149
I	A 5	A 146
J	T 2	T 143
K	LYS 203	GLY 676

There are 55 helices in PDB entry 8WH9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	74	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	30	42	Right-handed alpha
Helix 6	AA6	B	49	76	Right-handed alpha
Helix 7	AA7	B	82	93	Right-handed alpha
Helix 8	AA8	C	17	23	Right-handed alpha
Helix 9	AA9	C	27	37	Right-handed alpha
Helix 10	AB1	C	47	74	Right-handed alpha
Helix 11	AB2	C	80	91	Right-handed alpha
Helix 12	AB3	C	91	98	Right-handed alpha
Helix 13	AB4	D	62	74	Right-handed alpha
Helix 14	AB5	D	80	109	Right-handed alpha
Helix 15	AB6	D	115	127	Right-handed alpha
Helix 16	AB7	D	128	149	Right-handed alpha
Helix 17	AB8	E	45	55	Right-handed alpha
Helix 18	AB9	E	63	76	Right-handed alpha
Helix 19	AC1	E	85	114	Right-handed alpha
Helix 20	AC2	E	120	130	Right-handed alpha
Helix 21	AC3	F	24	29	Right-handed 310
Helix 22	AC4	F	30	42	Right-handed alpha
Helix 23	AC5	F	49	76	Right-handed alpha
Helix 24	AC6	F	82	92	Right-handed alpha
Helix 25	AC7	G	27	38	Right-handed alpha
Helix 26	AC8	G	46	74	Right-handed alpha
Helix 27	AC9	G	80	91	Right-handed alpha
Helix 28	AD1	G	91	98	Right-handed alpha
Helix 29	AD2	H	62	74	Right-handed alpha
Helix 30	AD3	H	80	109	Right-handed alpha
Helix 31	AD4	H	116	127	Right-handed alpha
Helix 32	AD5	H	128	148	Right-handed alpha
Helix 33	AD6	K	204	220	Right-handed alpha
Helix 34	AD7	K	233	246	Right-handed alpha
Helix 35	AD8	K	258	273	Right-handed alpha
Helix 36	AD9	K	286	291	Right-handed alpha
Helix 37	AE1	K	311	317	Right-handed alpha
Helix 38	AE2	K	317	323	Right-handed alpha
Helix 39	AE3	K	334	339	Right-handed 310
Helix 40	AE4	K	343	352	Right-handed alpha
Helix 41	AE5	K	369	380	Right-handed alpha
Helix 42	AE6	K	381	384	Right-handed 310
Helix 43	AE7	K	416	425	Right-handed alpha
Helix 44	AE8	K	453	465	Right-handed alpha
Helix 45	AE9	K	467	472	Right-handed alpha
Helix 46	AF1	K	473	475	Right-handed 310
Helix 47	AF2	K	488	499	Right-handed alpha
Helix 48	AF3	K	500	508	Right-handed alpha
Helix 49	AF4	K	519	522	Right-handed 310
Helix 50	AF5	K	523	536	Right-handed alpha
Helix 51	AF6	K	550	564	Right-handed alpha
Helix 52	AF7	K	575	587	Right-handed alpha
Helix 53	AF8	K	599	604	Right-handed alpha
Helix 54	AF9	K	623	635	Right-handed alpha
Helix 55	AG1	K	653	676	Right-handed alpha

There are 13 sheets in PDB entry 8WH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	E	118	119	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	E	83	84	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	C	101	103	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	D	113	114	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	D	78	79	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	98	first strand
Strand 2	G	101	103	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	44	first strand
Strand 2	H	113	114	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	79	first strand
Strand 2	H	78	79	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	223	225	first strand
Strand 2	K	357	360	parallel
Strand 3	K	329	332	parallel
Strand 4	K	253	257	parallel
Strand 5	K	306	310	parallel
Strand 6	K	278	280	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	444	450	first strand
Strand 2	K	644	650	parallel
Strand 3	K	614	617	parallel
Strand 4	K	543	546	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	567	570	first strand
Strand 2	K	595	598	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WH9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WH9