Analysis of interatomic Contacts of Structural Units in PDB entry:
8WIC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WIC entry

There are 29 chains in PDB entry 8WIC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLY 2	LYS 276
F	ARG 3	ARG 214
G	LEU 3	LYS 210
H	ALA 7	GLU 186
I	SER 2	GLU 166
J	MET 1	ARG 41
M	PRO 2	GLN 147
N	MET 1	LEU 122
O	VAL 3	LEU 147
Q	PRO 2	GLU 118
R	HIS 3	PHE 127
S	ASN 2	ARG 113
T	ALA 2	PRO 124
U	THR 3	ILE 102
V	PHE 7	PRO 119
W	ALA 2	GLY 97
X	MET 1	ILE 105
Z	SER 10	PRO 86
1	ALA 2	ARG 63
2	THR 5	GLY 67
3	ALA 2	VAL 59
5	ALA 2	ASP 55
6	VAL 7	SER 54
7	ALA 2	ALA 47
8	PRO 2	GLY 64
4	MET 1	LYS 48
A	A 2	C 3120
B	G 1	A 117
C	C 1	A 76

There are 84 helices in PDB entry 8WIC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	10	14	Right-handed 310
Helix 2	AA2	E	30	32	Right-handed 310
Helix 3	AA3	E	134	136	Right-handed 310
Helix 4	AA4	E	198	204	Right-handed 310
Helix 5	AA5	E	208	216	Right-handed alpha
Helix 6	AA6	E	222	226	Right-handed 310
Helix 7	AA7	E	262	266	Right-handed 310
Helix 8	AA8	F	41	46	Right-handed alpha
Helix 9	AA9	F	63	74	Right-handed alpha
Helix 10	AB1	F	88	93	Right-handed alpha
Helix 11	AB2	F	102	106	Right-handed 310
Helix 12	AB3	F	125	130	Right-handed alpha
Helix 13	AB4	G	21	26	Right-handed alpha
Helix 14	AB5	G	30	46	Right-handed alpha
Helix 15	AB6	G	103	121	Right-handed alpha
Helix 16	AB7	G	137	149	Right-handed alpha
Helix 17	AB8	G	162	169	Right-handed alpha
Helix 18	AB9	G	179	183	Right-handed 310
Helix 19	AC1	G	184	191	Right-handed alpha
Helix 20	AC2	G	198	210	Right-handed alpha
Helix 21	AC3	H	9	28	Right-handed alpha
Helix 22	AC4	H	31	35	Right-handed 310
Helix 23	AC5	H	48	52	Right-handed 310
Helix 24	AC6	H	54	69	Right-handed alpha
Helix 25	AC7	H	99	113	Right-handed alpha
Helix 26	AC8	H	169	181	Right-handed alpha
Helix 27	AC9	I	59	82	Right-handed alpha
Helix 28	AD1	I	138	151	Right-handed alpha
Helix 29	AD2	J	22	29	Right-handed alpha
Helix 30	AD3	M	24	38	Right-handed alpha
Helix 31	AD4	M	67	72	Right-handed alpha
Helix 32	AD5	M	89	96	Right-handed alpha
Helix 33	AD6	M	96	108	Right-handed alpha
Helix 34	AD7	M	112	120	Right-handed alpha
Helix 35	AD8	M	132	136	Right-handed 310
Helix 36	AD9	N	104	109	Right-handed alpha
Helix 37	AE1	N	111	118	Right-handed alpha
Helix 38	AE2	O	5	9	Right-handed 310
Helix 39	AE3	O	56	61	Right-handed alpha
Helix 40	AE4	O	80	87	Right-handed alpha
Helix 41	AE5	O	94	101	Right-handed alpha
Helix 42	AE6	O	130	140	Right-handed alpha
Helix 43	AE7	Q	13	32	Right-handed alpha
Helix 44	AE8	Q	38	57	Right-handed alpha
Helix 45	AE9	Q	59	71	Right-handed alpha
Helix 46	AF1	Q	72	82	Right-handed alpha
Helix 47	AF2	Q	82	87	Right-handed alpha
Helix 48	AF3	R	9	26	Right-handed alpha
Helix 49	AF4	R	67	72	Right-handed alpha
Helix 50	AF5	R	76	96	Right-handed alpha
Helix 51	AF6	R	111	123	Right-handed alpha
Helix 52	AF7	S	4	12	Right-handed alpha
Helix 53	AF8	S	52	55	Right-handed 310
Helix 54	AF9	S	96	102	Right-handed 310
Helix 55	AG1	T	6	21	Right-handed alpha
Helix 56	AG2	T	25	30	Right-handed 310
Helix 57	AG3	T	31	71	Right-handed alpha
Helix 58	AG4	T	75	87	Right-handed alpha
Helix 59	AG5	T	91	102	Right-handed alpha
Helix 60	AG6	T	102	117	Right-handed alpha
Helix 61	AG7	U	51	58	Right-handed alpha
Helix 62	AG8	V	20	29	Right-handed alpha
Helix 63	AG9	V	35	46	Right-handed alpha
Helix 64	AH1	V	50	69	Right-handed alpha
Helix 65	AH2	V	72	74	Right-handed 310
Helix 66	AH3	V	96	98	Right-handed 310
Helix 67	AH4	W	6	9	Right-handed 310
Helix 68	AH5	W	17	25	Right-handed alpha
Helix 69	AH6	W	38	51	Right-handed alpha
Helix 70	AH7	W	93	97	Right-handed 310
Helix 71	AH8	1	53	58	Right-handed alpha
Helix 72	AH9	2	6	11	Right-handed alpha
Helix 73	AI1	2	14	39	Right-handed alpha
Helix 74	AI2	2	44	67	Right-handed alpha
Helix 75	AI3	3	16	27	Right-handed alpha
Helix 76	AI4	3	40	50	Right-handed alpha
Helix 77	AI5	5	9	18	Right-handed alpha
Helix 78	AI6	5	43	49	Right-handed alpha
Helix 79	AI7	7	11	20	Right-handed alpha
Helix 80	AI8	7	20	27	Right-handed alpha
Helix 81	AI9	7	27	41	Right-handed alpha
Helix 82	AJ1	8	7	13	Right-handed alpha
Helix 83	AJ2	8	37	44	Right-handed alpha
Helix 84	AJ3	8	51	64	Right-handed alpha

There are 43 sheets in PDB entry 8WIC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	17	19	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	35	first strand
Strand 2	E	62	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	106	first strand
Strand 2	E	92	97	anti-parallel
Strand 3	E	77	83	anti-parallel
Strand 4	E	116	117	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	132	first strand
Strand 2	E	190	193	anti-parallel
Strand 3	E	141	143	anti-parallel
Strand 4	E	163	169	anti-parallel
Strand 5	E	172	176	anti-parallel
Strand 6	E	182	186	anti-parallel
Strand 7	E	268	270	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	146	first strand
Strand 2	E	153	155	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	17	first strand
Strand 2	F	23	30	anti-parallel
Strand 3	F	191	195	anti-parallel
Strand 4	F	174	186	anti-parallel
Strand 5	F	111	117	anti-parallel
Strand 6	F	205	210	anti-parallel
Strand 7	F	5	17	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	85	first strand
Strand 2	F	49	54	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	100	101	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	124	first strand
Strand 2	F	168	171	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	19	first strand
Strand 2	G	4	8	anti-parallel
Strand 3	G	124	127	parallel
Strand 4	G	193	197	parallel
Strand 5	G	154	157	parallel
Strand 6	G	175	178	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	73	76	first strand
Strand 2	H	91	98	anti-parallel
Strand 3	H	38	46	anti-parallel
Strand 4	H	160	165	anti-parallel
Strand 5	H	135	138	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	10	first strand
Strand 2	I	50	54	anti-parallel
Strand 3	I	42	44	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	20	first strand
Strand 2	I	23	27	anti-parallel
Strand 3	I	32	36	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	122	125	first strand
Strand 2	I	131	136	anti-parallel
Strand 3	I	84	91	anti-parallel
Strand 4	I	162	163	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	96	100	first strand
Strand 2	I	103	107	anti-parallel
Strand 3	I	114	116	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	20	first strand
Strand 2	J	2	5	anti-parallel
Strand 3	J	36	38	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	122	124	first strand
Strand 2	M	53	57	parallel
Strand 3	M	15	19	parallel
Strand 4	M	138	139	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	73	77	first strand
Strand 2	M	84	88	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	7	10	first strand
Strand 2	N	16	24	anti-parallel
Strand 3	N	38	46	anti-parallel
Strand 4	N	57	64	anti-parallel
Strand 5	N	83	87	anti-parallel
Strand 6	N	7	10	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	69	70	first strand
Strand 2	N	76	79	anti-parallel
Strand 3	S	67	74	anti-parallel
Strand 4	S	57	64	anti-parallel
Strand 5	S	37	50	anti-parallel
Strand 6	S	24	32	anti-parallel
Strand 7	S	80	87	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	76	79	first strand
Strand 2	O	110	113	parallel
Strand 3	O	128	129	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	91	93	first strand
Strand 2	O	122	126	parallel
Strand 3	O	144	146	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	33	37	first strand
Strand 2	Q	110	115	anti-parallel
Strand 3	Q	95	100	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	58	64	first strand
Strand 2	R	47	53	anti-parallel
Strand 3	R	37	42	anti-parallel
Strand 4	R	101	103	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	89	90	first strand
Strand 2	S	110	111	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	12	16	first strand
Strand 2	U	4	9	anti-parallel
Strand 3	U	39	43	anti-parallel
Strand 4	U	48	49	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	21	25	first strand
Strand 2	U	93	101	anti-parallel
Strand 3	U	60	69	anti-parallel
Strand 4	U	34	37	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	73	79	first strand
Strand 2	U	84	90	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	9	17	first strand
Strand 2	V	108	116	anti-parallel
Strand 3	V	76	85	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	89	94	first strand
Strand 2	V	100	105	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	11	14	first strand
Strand 2	W	28	33	anti-parallel
Strand 3	W	79	86	anti-parallel
Strand 4	W	54	62	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	66	68	first strand
Strand 2	W	73	75	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	66	67	first strand
Strand 2	X	32	35	anti-parallel
Strand 3	X	20	27	anti-parallel
Strand 4	X	8	11	anti-parallel
Strand 5	X	71	74	anti-parallel
Strand 6	X	80	81	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	40	43	first strand
Strand 2	X	60	63	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	83	87	first strand
Strand 2	X	94	98	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	22	23	first strand
Strand 2	Z	36	39	anti-parallel
Strand 3	Z	59	61	anti-parallel
Strand 4	Z	51	53	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	30	31	first strand
Strand 2	Z	65	72	anti-parallel
Strand 3	Z	75	81	anti-parallel
Strand 4	Z	46	47	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	13	18	first strand
Strand 2	1	24	29	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	33	39	first strand
Strand 2	1	46	52	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	34	38	first strand
Strand 2	3	3	8	anti-parallel
Strand 3	3	54	58	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	27	32	first strand
Strand 2	5	35	40	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	21	26	first strand
Strand 2	6	10	15	anti-parallel
Strand 3	6	47	53	anti-parallel
Strand 4	6	37	42	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	8	14	16	first strand
Strand 2	8	22	25	anti-parallel
Strand 3	8	47	49	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	21	26	first strand
Strand 2	4	10	15	anti-parallel
Strand 3	4	32	34	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WIC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WIC