Analysis of interatomic Contacts of Structural Units in PDB entry:
8WID

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WID entry

There are 23 chains in PDB entry 8WID (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	U 8	C 1522
b	G 26	A 43
v	GLY 2	GLY 32
d	GLY 2	GLY 209
e	ALA 2	LYS 201
f	ASN 35	GLU 200
g	MET 1	HIS 96
h	PRO 2	TYR 154
i	THR 2	TRP 132
j	PRO 25	ARG 150
k	GLN 4	GLN 101
l	LYS 23	ARG 137
m	PRO 2	LYS 123
n	ALA 2	ILE 117
o	ALA 2	TRP 101
p	ALA 2	ARG 89
q	ALA 2	GLU 114
r	GLN 4	ALA 97
s	THR 17	SER 81
t	PRO 2	HIS 83
u	ALA 2	LEU 86
x	GLY 56	GLY 66
w	MET 1	ARG 126

There are 86 helices in PDB entry 8WID. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	v	4	24	Right-handed alpha
Helix 2	AA2	v	24	32	Right-handed alpha
Helix 3	AA3	d	6	11	Right-handed alpha
Helix 4	AA4	d	27	46	Right-handed alpha
Helix 5	AA5	d	71	76	Right-handed alpha
Helix 6	AA6	d	80	92	Right-handed alpha
Helix 7	AA7	d	107	110	Right-handed 310
Helix 8	AA8	d	111	126	Right-handed alpha
Helix 9	AA9	d	128	142	Right-handed alpha
Helix 10	AB1	d	156	160	Right-handed 310
Helix 11	AB2	e	8	16	Right-handed alpha
Helix 12	AB3	e	23	29	Right-handed alpha
Helix 13	AB4	e	44	60	Right-handed alpha
Helix 14	AB5	e	63	77	Right-handed alpha
Helix 15	AB6	e	80	91	Right-handed alpha
Helix 16	AB7	e	92	100	Right-handed alpha
Helix 17	AB8	e	105	115	Right-handed alpha
Helix 18	AB9	e	142	145	Right-handed 310
Helix 19	AC1	e	147	155	Right-handed alpha
Helix 20	AC2	e	182	187	Right-handed alpha
Helix 21	AC3	e	191	200	Right-handed alpha
Helix 22	AC4	f	80	95	Right-handed alpha
Helix 23	AC5	f	133	144	Right-handed alpha
Helix 24	AC6	f	157	171	Right-handed alpha
Helix 25	AC7	f	174	183	Right-handed alpha
Helix 26	AC8	f	185	190	Right-handed alpha
Helix 27	AC9	f	191	200	Right-handed alpha
Helix 28	AD1	g	15	17	Right-handed 310
Helix 29	AD2	g	18	35	Right-handed alpha
Helix 30	AD3	g	68	82	Right-handed alpha
Helix 31	AD4	h	20	31	Right-handed alpha
Helix 32	AD5	h	35	55	Right-handed alpha
Helix 33	AD6	h	57	70	Right-handed alpha
Helix 34	AD7	h	92	110	Right-handed alpha
Helix 35	AD8	h	115	129	Right-handed alpha
Helix 36	AD9	h	132	148	Right-handed alpha
Helix 37	AE1	h	149	154	Right-handed 310
Helix 38	AE2	i	5	20	Right-handed alpha
Helix 39	AE3	i	30	43	Right-handed alpha
Helix 40	AE4	i	97	101	Right-handed 310
Helix 41	AE5	i	115	122	Right-handed alpha
Helix 42	AE6	j	61	76	Right-handed alpha
Helix 43	AE7	j	91	111	Right-handed alpha
Helix 44	AE8	j	114	121	Right-handed alpha
Helix 45	AE9	k	14	32	Right-handed alpha
Helix 46	AF1	k	80	88	Right-handed alpha
Helix 47	AF2	l	57	60	Right-handed 310
Helix 48	AF3	l	62	67	Right-handed 310
Helix 49	AF4	l	68	85	Right-handed alpha
Helix 50	AF5	l	101	112	Right-handed alpha
Helix 51	AF6	m	3	11	Right-handed alpha
Helix 52	AF7	m	113	117	Right-handed 310
Helix 53	AF8	n	14	21	Right-handed alpha
Helix 54	AF9	n	27	38	Right-handed alpha
Helix 55	AG1	n	44	48	Right-handed 310
Helix 56	AG2	n	49	64	Right-handed alpha
Helix 57	AG3	n	67	84	Right-handed alpha
Helix 58	AG4	n	86	94	Right-handed alpha
Helix 59	AG5	n	107	112	Right-handed alpha
Helix 60	AG6	o	3	21	Right-handed alpha
Helix 61	AG7	o	23	33	Right-handed alpha
Helix 62	AG8	o	38	43	Right-handed alpha
Helix 63	AG9	o	43	51	Right-handed alpha
Helix 64	AH1	o	52	60	Right-handed 310
Helix 65	AH2	o	81	90	Right-handed alpha
Helix 66	AH3	p	4	16	Right-handed alpha
Helix 67	AH4	p	24	44	Right-handed alpha
Helix 68	AH5	p	49	74	Right-handed alpha
Helix 69	AH6	p	74	86	Right-handed alpha
Helix 70	AH7	q	52	63	Right-handed alpha
Helix 71	AH8	q	67	78	Right-handed alpha
Helix 72	AH9	q	78	85	Right-handed alpha
Helix 73	AI1	q	101	114	Right-handed alpha
Helix 74	AI2	s	35	40	Right-handed alpha
Helix 75	AI3	s	50	55	Right-handed alpha
Helix 76	AI4	s	57	74	Right-handed alpha
Helix 77	AI5	t	12	24	Right-handed alpha
Helix 78	AI6	t	41	45	Right-handed 310
Helix 79	AI7	t	70	75	Right-handed 310
Helix 80	AI8	u	4	42	Right-handed alpha
Helix 81	AI9	u	43	64	Right-handed alpha
Helix 82	AJ1	u	68	86	Right-handed alpha
Helix 83	AJ2	x	57	65	Right-handed alpha
Helix 84	AJ3	w	13	24	Right-handed alpha
Helix 85	AJ4	w	73	93	Right-handed alpha
Helix 86	AJ5	w	95	99	Right-handed 310

There are 22 sheets in PDB entry 8WID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	20	21	first strand
Strand 2	d	51	59	parallel
Strand 3	d	62	69	anti-parallel
Strand 4	d	97	104	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	164	171	first strand
Strand 2	d	148	155	anti-parallel
Strand 3	d	194	206	anti-parallel
Strand 4	d	180	191	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	123	124	first strand
Strand 2	e	118	120	anti-parallel
Strand 3	e	137	140	anti-parallel
Strand 4	e	175	177	anti-parallel
Strand 5	e	166	168	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	37	49	first strand
Strand 2	f	54	65	anti-parallel
Strand 3	f	70	78	anti-parallel
Strand 4	f	96	98	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	101	102	first strand
Strand 2	f	105	106	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	110	114	first strand
Strand 2	f	117	123	anti-parallel
Strand 3	f	148	152	anti-parallel
Strand 4	f	130	131	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	37	47	first strand
Strand 2	g	57	67	anti-parallel
Strand 3	g	2	10	anti-parallel
Strand 4	g	85	92	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	73	79	first strand
Strand 2	h	84	90	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	24	28	first strand
Strand 2	i	58	63	anti-parallel
Strand 3	i	48	53	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	76	79	first strand
Strand 2	i	125	132	anti-parallel
Strand 3	i	88	89	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	76	79	first strand
Strand 2	i	125	132	anti-parallel
Strand 3	i	103	108	anti-parallel
Strand 4	i	111	114	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	27	32	first strand
Strand 2	j	35	42	anti-parallel
Strand 3	j	82	88	anti-parallel
Strand 4	j	48	50	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	40	52	first strand
Strand 2	k	62	75	anti-parallel
Strand 3	k	7	12	anti-parallel
Strand 4	k	97	101	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	40	52	first strand
Strand 2	k	62	75	anti-parallel
Strand 3	o	97	98	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	49	55	first strand
Strand 2	l	39	45	anti-parallel
Strand 3	l	27	34	anti-parallel
Strand 4	l	90	96	parallel
Strand 5	l	115	121	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	29	40	first strand
Strand 2	m	50	57	anti-parallel
Strand 3	m	62	66	anti-parallel
Strand 4	m	95	97	parallel
Strand 5	m	79	84	anti-parallel
Strand 6	m	29	40	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	3	4	first strand
Strand 2	n	7	8	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	73	74	first strand
Strand 2	o	79	80	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	49	51	first strand
Strand 2	q	35	40	anti-parallel
Strand 3	q	17	24	anti-parallel
Strand 4	q	3	10	anti-parallel
Strand 5	q	65	66	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	22	32	first strand
Strand 2	r	35	45	anti-parallel
Strand 3	r	52	62	anti-parallel
Strand 4	r	86	95	parallel
Strand 5	r	73	83	anti-parallel
Strand 6	r	22	32	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	31	32	first strand
Strand 2	t	48	52	parallel
Strand 3	t	57	61	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	w	4	6	first strand
Strand 2	w	33	41	parallel
Strand 3	w	52	60	anti-parallel
Strand 4	w	63	71	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WID

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WID