Analysis of interatomic Contacts of Structural Units in PDB entry:
8WIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WIM entry

There is 1 chain in PDB entry 8WIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 307ALA 911
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8WIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
326 332Right-handed alpha
Helix 2
AA2
A
365 373Right-handed alpha
Helix 3
AA3
A
375 383Right-handed alpha
Helix 4
AA4
A
394 406Right-handed alpha
Helix 5
AA5
A
416 436Right-handed alpha
Helix 6
AA6
A
442 450Right-handed alpha
Helix 7
AA7
A
457 464Right-handed 310
Helix 8
AA8
A
467 475Right-handed alpha
Helix 9
AA9
A
476 491Right-handed alpha
Helix 10
AB1
A
525 537Right-handed alpha
Helix 11
AB2
A
538 544Right-handed alpha
Helix 12
AB3
A
554 556Right-handed 310
Helix 13
AB4
A
557 568Right-handed alpha
Helix 14
AB5
A
579 584Right-handed alpha
Helix 15
AB6
A
585 600Right-handed alpha
Helix 16
AB7
A
602 617Right-handed alpha
Helix 17
AB8
A
648 670Right-handed alpha
Helix 18
AB9
A
672 674Right-handed 310
Helix 19
AC1
A
675 686Right-handed alpha
Helix 20
AC2
A
704 715Right-handed alpha
Helix 21
AC3
A
715 722Right-handed alpha
Helix 22
AC4
A
740 744Right-handed 310
Helix 23
AC5
A
767 777Right-handed alpha
Helix 24
AC6
A
787 804Right-handed alpha
Helix 25
AC7
A
806 820Right-handed alpha
Helix 26
AC8
A
845 855Right-handed alpha
Helix 27
AC9
A
860 864Right-handed 310
Helix 28
AD1
A
868 872Right-handed 310
Helix 29
AD2
A
880 898Right-handed alpha
Helix 30
AD3
A
906 910Right-handed 310
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There are 4 sheets in PDB entry 8WIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 353first strand
Strand 2
A
630 637anti-parallel
Strand 3
A
620 627anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 501first strand
Strand 2
A
521 523anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 573first strand
Strand 2
A
698 703anti-parallel
Strand 3
A
690 695anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
750 756first strand
Strand 2
A
759 765anti-parallel
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