Analysis of interatomic Contacts of Structural Units in PDB entry:
8WIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WIP entry

There are 2 chains in PDB entry 8WIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LYS 270
B
 GLY -1LYS 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8WIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 28Right-handed alpha
Helix 2
AA2
A
32 59Right-handed alpha
Helix 3
AA3
A
75 79Right-handed 310
Helix 4
AA4
A
90 97Right-handed alpha
Helix 5
AA5
A
162 167Right-handed 310
Helix 6
AA6
A
168 180Right-handed alpha
Helix 7
AA7
A
191 201Right-handed alpha
Helix 8
AA8
A
213 227Right-handed alpha
Helix 9
AA9
A
239 244Right-handed alpha
Helix 10
AB1
A
250 262Right-handed alpha
Helix 11
AB2
A
263 265Right-handed 310
Helix 12
AB3
A
266 270Right-handed 310
Helix 13
AB4
B
2 28Right-handed alpha
Helix 14
AB5
B
35 59Right-handed alpha
Helix 15
AB6
B
75 79Right-handed 310
Helix 16
AB7
B
90 97Right-handed alpha
Helix 17
AB8
B
162 167Right-handed 310
Helix 18
AB9
B
168 181Right-handed alpha
Helix 19
AC1
B
191 201Right-handed alpha
Helix 20
AC2
B
213 227Right-handed alpha
Helix 21
AC3
B
239 244Right-handed alpha
Helix 22
AC4
B
250 262Right-handed alpha
Helix 23
AC5
B
263 265Right-handed 310
Helix 24
AC6
B
266 270Right-handed 310
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There are 4 sheets in PDB entry 8WIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
63 66anti-parallel
Strand 3
A
81 89parallel
Strand 4
A
102 109anti-parallel
Strand 5
A
112 120anti-parallel
Strand 6
A
125 130anti-parallel
Strand 7
A
134 137anti-parallel
Strand 8
A
140 141anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
154 157parallel
Strand 3
A
206 209parallel
Strand 4
A
246 249anti-parallel
Strand 5
A
230 232anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
63 66anti-parallel
Strand 3
B
81 89parallel
Strand 4
B
102 109anti-parallel
Strand 5
B
112 120anti-parallel
Strand 6
B
125 130anti-parallel
Strand 7
B
134 137anti-parallel
Strand 8
B
140 141anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 187first strand
Strand 2
B
154 157parallel
Strand 3
B
206 209parallel
Strand 4
B
246 249anti-parallel
Strand 5
B
230 232anti-parallel
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