Analysis of interatomic Contacts of Structural Units in PDB entry:
8WIS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WIS entry

There are 3 chains in PDB entry 8WIS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 23	LEU 515
B	ASN 23	LEU 515
C	ASN 23	LEU 515

There are 34 helices in PDB entry 8WIS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	76	83	Right-handed alpha
Helix 2	AA2	A	116	127	Right-handed alpha
Helix 3	AA3	A	136	145	Right-handed alpha
Helix 4	AA4	A	150	154	Right-handed 310
Helix 5	AA5	A	192	201	Right-handed alpha
Helix 6	AA6	A	229	237	Right-handed alpha
Helix 7	AA7	A	384	415	Right-handed alpha
Helix 8	AA8	A	419	428	Right-handed alpha
Helix 9	AA9	A	433	474	Right-handed alpha
Helix 10	AB1	A	492	501	Right-handed alpha
Helix 11	AB2	A	506	510	Right-handed 310
Helix 12	AB3	B	76	83	Right-handed alpha
Helix 13	AB4	B	88	92	Right-handed 310
Helix 14	AB5	B	116	127	Right-handed alpha
Helix 15	AB6	B	136	145	Right-handed alpha
Helix 16	AB7	B	150	154	Right-handed 310
Helix 17	AB8	B	192	201	Right-handed alpha
Helix 18	AB9	B	229	237	Right-handed alpha
Helix 19	AC1	B	384	415	Right-handed alpha
Helix 20	AC2	B	419	428	Right-handed alpha
Helix 21	AC3	B	433	474	Right-handed alpha
Helix 22	AC4	B	492	501	Right-handed alpha
Helix 23	AC5	B	506	510	Right-handed 310
Helix 24	AC6	C	76	83	Right-handed alpha
Helix 25	AC7	C	116	127	Right-handed alpha
Helix 26	AC8	C	136	145	Right-handed alpha
Helix 27	AC9	C	150	154	Right-handed 310
Helix 28	AD1	C	192	201	Right-handed alpha
Helix 29	AD2	C	229	237	Right-handed alpha
Helix 30	AD3	C	384	415	Right-handed alpha
Helix 31	AD4	C	419	428	Right-handed alpha
Helix 32	AD5	C	433	474	Right-handed alpha
Helix 33	AD6	C	492	501	Right-handed alpha
Helix 34	AD7	C	506	510	Right-handed 310

There are 33 sheets in PDB entry 8WIS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	24	30	parallel
Strand 3	A	370	373	anti-parallel
Strand 4	A	381	383	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	24	30	parallel
Strand 3	A	484	486	anti-parallel
Strand 4	A	478	479	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	44	47	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	332	334	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	290	291	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	71	first strand
Strand 2	A	98	101	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	248	255	parallel
Strand 3	A	181	189	anti-parallel
Strand 4	A	270	272	anti-parallel
Strand 5	A	160	161	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	248	255	parallel
Strand 3	A	181	189	anti-parallel
Strand 4	A	277	278	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	176	first strand
Strand 2	A	261	266	anti-parallel
Strand 3	A	208	213	anti-parallel
Strand 4	A	217	222	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	305	first strand
Strand 2	A	298	300	anti-parallel
Strand 3	A	320	321	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	326	327	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	24	30	parallel
Strand 3	B	370	373	anti-parallel
Strand 4	B	381	383	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	24	30	parallel
Strand 3	B	484	486	anti-parallel
Strand 4	B	478	479	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	44	47	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	332	334	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	290	291	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	98	100	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	115	first strand
Strand 2	B	248	255	parallel
Strand 3	B	182	189	anti-parallel
Strand 4	B	270	272	anti-parallel
Strand 5	B	160	161	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	275	276	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	176	first strand
Strand 2	B	261	266	anti-parallel
Strand 3	B	208	213	anti-parallel
Strand 4	B	217	222	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	299	first strand
Strand 2	B	304	305	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	313	first strand
Strand 2	B	326	327	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	24	30	parallel
Strand 3	C	370	373	anti-parallel
Strand 4	C	381	383	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	24	30	parallel
Strand 3	C	484	486	anti-parallel
Strand 4	C	478	479	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	39	first strand
Strand 2	C	44	47	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	332	334	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	290	291	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	70	first strand
Strand 2	C	98	100	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	115	first strand
Strand 2	C	247	255	parallel
Strand 3	C	181	190	anti-parallel
Strand 4	C	270	272	anti-parallel
Strand 5	C	160	161	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	115	first strand
Strand 2	C	247	255	parallel
Strand 3	C	181	190	anti-parallel
Strand 4	C	277	278	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	176	first strand
Strand 2	C	261	266	anti-parallel
Strand 3	C	208	213	anti-parallel
Strand 4	C	217	222	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	305	first strand
Strand 2	C	298	300	anti-parallel
Strand 3	C	320	321	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	313	first strand
Strand 2	C	326	327	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WIS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WIS