Analysis of interatomic Contacts of Structural Units in PDB entry:
8WJB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WJB entry

There are 2 chains in PDB entry 8WJB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 188	HIS 606
B	PRO 186	HIS 606

There are 9 helices in PDB entry 8WJB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	278	280	Right-handed 310
Helix 2	AA2	A	391	400	Right-handed alpha
Helix 3	AA3	A	419	423	Right-handed 310
Helix 4	AA4	A	433	437	Right-handed 310
Helix 5	AA5	B	278	280	Right-handed 310
Helix 6	AA6	B	334	336	Right-handed 310
Helix 7	AA7	B	390	399	Right-handed alpha
Helix 8	AA8	B	433	437	Right-handed 310
Helix 9	AA9	B	474	478	Right-handed 310

There are 16 sheets in PDB entry 8WJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	199	first strand
Strand 2	A	592	605	anti-parallel
Strand 3	A	574	584	anti-parallel
Strand 4	A	563	571	anti-parallel
Strand 5	A	511	512	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	592	605	anti-parallel
Strand 3	A	574	584	anti-parallel
Strand 4	A	560	561	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	227	first strand
Strand 2	A	232	240	anti-parallel
Strand 3	A	248	259	anti-parallel
Strand 4	A	267	275	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	289	first strand
Strand 2	A	294	300	anti-parallel
Strand 3	A	317	322	anti-parallel
Strand 4	A	329	333	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	426	431	parallel
Strand 3	A	405	418	anti-parallel
Strand 4	A	360	370	anti-parallel
Strand 5	A	355	357	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	349	first strand
Strand 2	A	360	370	anti-parallel
Strand 3	A	405	418	anti-parallel
Strand 4	A	401	402	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	448	first strand
Strand 2	A	451	456	anti-parallel
Strand 3	A	467	470	anti-parallel
Strand 4	A	479	480	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	516	first strand
Strand 2	A	524	531	anti-parallel
Strand 3	A	536	543	anti-parallel
Strand 4	A	549	554	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	199	first strand
Strand 2	B	592	605	anti-parallel
Strand 3	B	574	584	anti-parallel
Strand 4	B	563	571	anti-parallel
Strand 5	B	511	512	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	592	605	anti-parallel
Strand 3	B	574	584	anti-parallel
Strand 4	B	560	561	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	227	first strand
Strand 2	B	232	240	anti-parallel
Strand 3	B	248	259	anti-parallel
Strand 4	B	267	275	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	289	first strand
Strand 2	B	294	300	anti-parallel
Strand 3	B	317	322	anti-parallel
Strand 4	B	329	333	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	426	431	parallel
Strand 3	B	408	418	anti-parallel
Strand 4	B	360	370	anti-parallel
Strand 5	B	348	349	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	426	431	parallel
Strand 3	B	408	418	anti-parallel
Strand 4	B	360	370	anti-parallel
Strand 5	B	355	357	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	448	first strand
Strand 2	B	451	456	anti-parallel
Strand 3	B	466	470	anti-parallel
Strand 4	B	479	480	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	516	first strand
Strand 2	B	524	531	anti-parallel
Strand 3	B	536	543	anti-parallel
Strand 4	B	549	554	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WJB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WJB