Analysis of interatomic Contacts of Structural Units in PDB entry:
8WJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WJH entry

There is 1 chain in PDB entry 8WJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 517
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 8WJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 10Right-handed alpha
Helix 2
AA2
A
14 36Right-handed alpha
Helix 3
AA3
A
37 42Right-handed alpha
Helix 4
AA4
A
51 56Right-handed alpha
Helix 5
AA5
A
65 74Right-handed alpha
Helix 6
AA6
A
92 96Right-handed 310
Helix 7
AA7
A
106 108Right-handed 310
Helix 8
AA8
A
127 133Right-handed alpha
Helix 9
AA9
A
140 164Right-handed alpha
Helix 10
AB1
A
168 187Right-handed alpha
Helix 11
AB2
A
188 190Right-handed 310
Helix 12
AB3
A
192 222Right-handed alpha
Helix 13
AB4
A
223 253Right-handed alpha
Helix 14
AB5
A
254 276Right-handed alpha
Helix 15
AB6
A
279 286Right-handed alpha
Helix 16
AB7
A
288 303Right-handed alpha
Helix 17
AB8
A
314 320Right-handed alpha
Helix 18
AB9
A
320 327Right-handed alpha
Helix 19
AC1
A
335 339Right-handed alpha
Helix 20
AC2
A
339 366Right-handed alpha
Helix 21
AC3
A
366 371Right-handed alpha
Helix 22
AC4
A
373 399Right-handed alpha
Helix 23
AC5
A
400 422Right-handed alpha
Helix 24
AC6
A
426 456Right-handed alpha
Helix 25
AC7
A
457 484Right-handed alpha
Helix 26
AC8
A
485 488Right-handed 310
Helix 27
AC9
A
491 512Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8WJH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
117 119anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
110 112anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il