Analysis of interatomic Contacts of Structural Units in PDB entry:
8WJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WJL entry

There are 3 chains in PDB entry 8WJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 366GLN 824
A
 LEU 326LEU 779
C
 ASP 29LEU 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 8WJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
369 375Right-handed 310
Helix 2
AA2
B
376 431Right-handed alpha
Helix 3
AA3
B
434 462Right-handed alpha
Helix 4
AA4
B
465 491Right-handed alpha
Helix 5
AA5
B
492 494Right-handed 310
Helix 6
AA6
B
514 522Right-handed alpha
Helix 7
AA7
B
524 528Right-handed 310
Helix 8
AA8
B
546 552Right-handed 310
Helix 9
AA9
B
553 558Right-handed alpha
Helix 10
AB1
B
559 563Right-handed 310
Helix 11
AB2
B
568 579Right-handed alpha
Helix 12
AB3
B
580 583Right-handed 310
Helix 13
AB4
B
611 615Right-handed alpha
Helix 14
AB5
B
621 631Right-handed alpha
Helix 15
AB6
B
632 636Right-handed 310
Helix 16
AB7
B
646 651Right-handed alpha
Helix 17
AB8
B
696 701Right-handed 310
Helix 18
AB9
B
702 761Right-handed alpha
Helix 19
AC1
B
769 817Right-handed alpha
Helix 20
AC2
A
332 346Right-handed alpha
Helix 21
AC3
A
347 385Right-handed alpha
Helix 22
AC4
A
396 442Right-handed alpha
Helix 23
AC5
A
444 448Right-handed 310
Helix 24
AC6
A
452 461Right-handed 310
Helix 25
AC7
A
462 473Right-handed alpha
Helix 26
AC8
A
477 481Right-handed alpha
Helix 27
AC9
A
485 490Right-handed alpha
Helix 28
AD1
A
494 505Right-handed alpha
Helix 29
AD2
A
506 511Right-handed alpha
Helix 30
AD3
A
519 524Right-handed alpha
Helix 31
AD4
A
562 566Right-handed alpha
Helix 32
AD5
A
574 578Right-handed 310
Helix 33
AD6
A
581 584Right-handed 310
Helix 34
AD7
A
659 661Right-handed 310
Helix 35
AD8
A
662 708Right-handed alpha
Helix 36
AD9
A
709 766Right-handed alpha
Helix 37
AE1
A
767 774Right-handed 310
Helix 38
AE2
C
32 34Right-handed 310
Helix 39
AE3
C
35 52Right-handed alpha
Helix 40
AE4
C
59 81Right-handed alpha
Helix 41
AE5
C
137 141Right-handed 310
Helix 42
AE6
C
143 147Right-handed 310
Helix 43
AE7
C
231 235Right-handed 310
Helix 44
AE8
C
241 267Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8WJL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
541 542first strand
Strand 2
B
616 617anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
637 638first strand
Strand 2
B
659 664parallel
Strand 3
B
667 672anti-parallel
Strand 4
B
676 680anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 483first strand
Strand 2
A
514 515anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 561first strand
Strand 2
A
586 587anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 604first strand
Strand 2
A
608 609anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 614first strand
Strand 2
A
621 622anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 205first strand
Strand 2
C
194 196anti-parallel
Strand 3
C
236 237anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il