Analysis of interatomic Contacts of Structural Units in PDB entry:
8WJN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WJN entry

There are 5 chains in PDB entry 8WJN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 76	PRO 1104
A	PRO 32	CYS 1065
F	PRO 11	ILE 336
G	ASP 11	ILE 303
H	SER 39	ASP 402

There are 79 helices in PDB entry 8WJN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	117	126	Right-handed alpha
Helix 2	AA2	B	129	134	Right-handed alpha
Helix 3	AA3	B	165	170	Right-handed alpha
Helix 4	AA4	B	200	211	Right-handed alpha
Helix 5	AA5	B	217	222	Right-handed 310
Helix 6	AA6	B	223	232	Right-handed alpha
Helix 7	AA7	B	235	247	Right-handed alpha
Helix 8	AA8	B	248	286	Right-handed alpha
Helix 9	AA9	B	295	316	Right-handed alpha
Helix 10	AB1	B	317	321	Right-handed 310
Helix 11	AB2	B	873	880	Right-handed alpha
Helix 12	AB3	B	884	889	Right-handed alpha
Helix 13	AB4	B	897	918	Right-handed alpha
Helix 14	AB5	B	921	987	Right-handed alpha
Helix 15	AB6	B	1017	1019	Right-handed 310
Helix 16	AB7	B	1020	1037	Right-handed alpha
Helix 17	AB8	B	1054	1061	Right-handed alpha
Helix 18	AB9	B	1062	1072	Right-handed alpha
Helix 19	AC1	B	1084	1089	Right-handed alpha
Helix 20	AC2	A	75	83	Right-handed 310
Helix 21	AC3	A	89	93	Right-handed 310
Helix 22	AC4	A	98	103	Right-handed 310
Helix 23	AC5	A	119	123	Right-handed 310
Helix 24	AC6	A	158	170	Right-handed alpha
Helix 25	AC7	A	181	191	Right-handed alpha
Helix 26	AC8	A	192	205	Right-handed alpha
Helix 27	AC9	A	206	261	Right-handed alpha
Helix 28	AD1	A	269	274	Right-handed alpha
Helix 29	AD2	A	275	283	Right-handed 310
Helix 30	AD3	A	827	832	Right-handed 310
Helix 31	AD4	A	833	841	Right-handed alpha
Helix 32	AD5	A	848	857	Right-handed alpha
Helix 33	AD6	A	862	870	Right-handed alpha
Helix 34	AD7	A	870	875	Right-handed alpha
Helix 35	AD8	A	876	878	Right-handed 310
Helix 36	AD9	A	883	948	Right-handed alpha
Helix 37	AE1	A	960	964	Right-handed 310
Helix 38	AE2	A	987	1003	Right-handed alpha
Helix 39	AE3	A	1022	1037	Right-handed alpha
Helix 40	AE4	F	13	28	Right-handed alpha
Helix 41	AE5	F	34	45	Right-handed alpha
Helix 42	AE6	F	46	48	Right-handed 310
Helix 43	AE7	F	56	77	Right-handed alpha
Helix 44	AE8	F	90	98	Right-handed 310
Helix 45	AE9	F	151	168	Right-handed alpha
Helix 46	AF1	F	183	195	Right-handed alpha
Helix 47	AF2	F	212	218	Right-handed alpha
Helix 48	AF3	F	223	237	Right-handed alpha
Helix 49	AF4	F	251	259	Right-handed alpha
Helix 50	AF5	F	259	266	Right-handed alpha
Helix 51	AF6	F	306	316	Right-handed alpha
Helix 52	AF7	G	12	25	Right-handed alpha
Helix 53	AF8	G	25	42	Right-handed alpha
Helix 54	AF9	G	48	62	Right-handed alpha
Helix 55	AG1	G	68	83	Right-handed alpha
Helix 56	AG2	G	134	151	Right-handed alpha
Helix 57	AG3	G	152	155	Right-handed 310
Helix 58	AG4	G	178	195	Right-handed alpha
Helix 59	AG5	G	201	212	Right-handed alpha
Helix 60	AG6	G	226	238	Right-handed alpha
Helix 61	AG7	G	259	266	Right-handed alpha
Helix 62	AG8	G	267	280	Right-handed alpha
Helix 63	AG9	G	283	287	Right-handed 310
Helix 64	AH1	G	289	298	Right-handed alpha
Helix 65	AH2	H	43	72	Right-handed alpha
Helix 66	AH3	H	74	91	Right-handed alpha
Helix 67	AH4	H	99	121	Right-handed alpha
Helix 68	AH5	H	131	140	Right-handed alpha
Helix 69	AH6	H	199	206	Right-handed 310
Helix 70	AH7	H	219	227	Right-handed alpha
Helix 71	AH8	H	241	245	Right-handed 310
Helix 72	AH9	H	293	301	Right-handed alpha
Helix 73	AI1	H	307	312	Right-handed 310
Helix 74	AI2	H	321	326	Right-handed alpha
Helix 75	AI3	H	330	335	Right-handed 310
Helix 76	AI4	H	360	362	Right-handed 310
Helix 77	AI5	H	363	370	Right-handed alpha
Helix 78	AI6	H	371	373	Right-handed 310
Helix 79	AI7	H	387	392	Right-handed alpha

There are 12 sheets in PDB entry 8WJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	99	first strand
Strand 2	B	82	88	anti-parallel
Strand 3	B	149	157	anti-parallel
Strand 4	B	172	180	anti-parallel
Strand 5	B	188	191	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1045	1047	first strand
Strand 2	B	1078	1081	parallel
Strand 3	B	106	108	parallel
Strand 4	B	1098	1100	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	989	991	first strand
Strand 2	B	1004	1006	anti-parallel
Strand 3	B	1014	1015	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	994	995	first strand
Strand 2	B	1000	1001	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	42	47	anti-parallel
Strand 3	A	112	116	anti-parallel
Strand 4	A	135	140	anti-parallel
Strand 5	A	149	152	anti-parallel
Strand 6	A	156	157	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	950	956	first strand
Strand 2	A	965	971	anti-parallel
Strand 3	A	979	980	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1010	1013	first strand
Strand 2	A	1043	1046	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	33	first strand
Strand 2	F	131	135	anti-parallel
Strand 3	F	82	86	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	208	first strand
Strand 2	F	335	336	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	241	242	first strand
Strand 2	F	248	249	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	47	first strand
Strand 2	G	122	127	anti-parallel
Strand 3	G	86	90	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	200	first strand
Strand 2	G	251	258	anti-parallel
Strand 3	G	240	247	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WJN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WJN