Analysis of interatomic Contacts of Structural Units in PDB entry:
8WK1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WK1 entry

There are 4 chains in PDB entry 8WK1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 16	ASN 238
B	LYS 27	SER 209
C	ILE 16	ASN 238
D	LYS 27	ALA 208

There are 10 helices in PDB entry 8WK1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	57	Right-handed 310
Helix 2	AA2	A	159	167	Right-handed alpha
Helix 3	AA3	A	227	237	Right-handed alpha
Helix 4	AA4	B	52	56	Right-handed 310
Helix 5	AA5	B	146	153	Right-handed 310
Helix 6	AA6	C	35	39	Right-handed 310
Helix 7	AA7	C	53	57	Right-handed 310
Helix 8	AA8	C	159	167	Right-handed alpha
Helix 9	AA9	C	227	237	Right-handed alpha
Helix 10	AB1	D	146	153	Right-handed 310

There are 14 sheets in PDB entry 8WK1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	151	156	anti-parallel
Strand 3	A	130	135	anti-parallel
Strand 4	A	195	198	anti-parallel
Strand 5	A	201	208	anti-parallel
Strand 6	A	219	223	anti-parallel
Strand 7	A	175	178	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	38	46	anti-parallel
Strand 3	A	49	52	anti-parallel
Strand 4	A	101	105	anti-parallel
Strand 5	A	78	87	anti-parallel
Strand 6	A	62	65	anti-parallel
Strand 7	A	30	34	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	108	first strand
Strand 2	B	86	90	anti-parallel
Strand 3	B	44	49	anti-parallel
Strand 4	B	203	207	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	64	first strand
Strand 2	B	67	75	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	136	137	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	159	first strand
Strand 2	B	163	168	anti-parallel
Strand 3	B	181	188	anti-parallel
Strand 4	B	191	196	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	151	156	anti-parallel
Strand 3	C	130	135	anti-parallel
Strand 4	C	195	198	anti-parallel
Strand 5	C	201	209	anti-parallel
Strand 6	C	219	223	anti-parallel
Strand 7	C	175	178	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	151	156	anti-parallel
Strand 3	C	130	135	anti-parallel
Strand 4	C	195	198	anti-parallel
Strand 5	C	201	209	anti-parallel
Strand 6	D	52	53	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	40	46	anti-parallel
Strand 3	C	49	52	anti-parallel
Strand 4	C	101	105	anti-parallel
Strand 5	C	78	87	anti-parallel
Strand 6	C	62	65	anti-parallel
Strand 7	C	30	33	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	49	first strand
Strand 2	D	203	207	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	64	first strand
Strand 2	D	67	75	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	90	first strand
Strand 2	D	104	108	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	D	136	137	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	159	first strand
Strand 2	D	163	168	anti-parallel
Strand 3	D	181	188	anti-parallel
Strand 4	D	191	197	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WK1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WK1