Analysis of interatomic Contacts of Structural Units in PDB entry:
8WK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WK5 entry

There are 4 chains in PDB entry 8WK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3GLN 309
B
 GLN 4GLN 309
C
 ASN 3GLN 309
D
 ASN 3GLN 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 8WK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 52Right-handed alpha
Helix 2
AA2
A
61 65Right-handed 310
Helix 3
AA3
A
66 77Right-handed alpha
Helix 4
AA4
A
80 82Right-handed 310
Helix 5
AA5
A
99 112Right-handed alpha
Helix 6
AA6
A
133 147Right-handed alpha
Helix 7
AA7
A
159 170Right-handed alpha
Helix 8
AA8
A
191 199Right-handed alpha
Helix 9
AA9
A
209 213Right-handed 310
Helix 10
AB1
A
218 221Right-handed 310
Helix 11
AB2
A
222 236Right-handed alpha
Helix 12
AB3
A
238 250Right-handed alpha
Helix 13
AB4
A
260 269Right-handed alpha
Helix 14
AB5
A
270 273Right-handed 310
Helix 15
AB6
A
276 289Right-handed alpha
Helix 16
AB7
A
297 302Right-handed alpha
Helix 17
AB8
A
303 308Right-handed 310
Helix 18
AB9
B
38 52Right-handed alpha
Helix 19
AC1
B
61 65Right-handed 310
Helix 20
AC2
B
66 77Right-handed alpha
Helix 21
AC3
B
80 82Right-handed 310
Helix 22
AC4
B
99 112Right-handed alpha
Helix 23
AC5
B
133 147Right-handed alpha
Helix 24
AC6
B
159 170Right-handed alpha
Helix 25
AC7
B
191 199Right-handed alpha
Helix 26
AC8
B
209 214Right-handed alpha
Helix 27
AC9
B
218 221Right-handed 310
Helix 28
AD1
B
222 236Right-handed alpha
Helix 29
AD2
B
238 250Right-handed alpha
Helix 30
AD3
B
260 269Right-handed alpha
Helix 31
AD4
B
270 273Right-handed 310
Helix 32
AD5
B
276 289Right-handed alpha
Helix 33
AD6
B
297 302Right-handed alpha
Helix 34
AD7
B
303 308Right-handed 310
Helix 35
AD8
C
38 52Right-handed alpha
Helix 36
AD9
C
61 65Right-handed 310
Helix 37
AE1
C
66 77Right-handed alpha
Helix 38
AE2
C
80 82Right-handed 310
Helix 39
AE3
C
99 112Right-handed alpha
Helix 40
AE4
C
133 147Right-handed alpha
Helix 41
AE5
C
159 170Right-handed alpha
Helix 42
AE6
C
191 199Right-handed alpha
Helix 43
AE7
C
209 213Right-handed 310
Helix 44
AE8
C
222 236Right-handed alpha
Helix 45
AE9
C
238 250Right-handed alpha
Helix 46
AF1
C
260 269Right-handed alpha
Helix 47
AF2
C
270 273Right-handed 310
Helix 48
AF3
C
276 290Right-handed alpha
Helix 49
AF4
C
297 302Right-handed alpha
Helix 50
AF5
C
304 309Right-handed alpha
Helix 51
AF6
D
38 52Right-handed alpha
Helix 52
AF7
D
61 65Right-handed 310
Helix 53
AF8
D
66 77Right-handed alpha
Helix 54
AF9
D
80 82Right-handed 310
Helix 55
AG1
D
99 112Right-handed alpha
Helix 56
AG2
D
133 147Right-handed alpha
Helix 57
AG3
D
159 168Right-handed alpha
Helix 58
AG4
D
191 199Right-handed alpha
Helix 59
AG5
D
209 214Right-handed alpha
Helix 60
AG6
D
218 221Right-handed 310
Helix 61
AG7
D
222 229Right-handed alpha
Helix 62
AG8
D
238 250Right-handed alpha
Helix 63
AG9
D
260 269Right-handed alpha
Helix 64
AH1
D
270 273Right-handed 310
Helix 65
AH2
D
276 289Right-handed alpha
Helix 66
AH3
D
297 302Right-handed alpha
Helix 67
AH4
D
304 309Right-handed alpha
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There are 8 sheets in PDB entry 8WK5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
14 16anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
56 59parallel
Strand 3
A
84 90parallel
Strand 4
A
118 121parallel
Strand 5
A
153 156parallel
Strand 6
A
176 180parallel
Strand 7
A
202 206parallel
Strand 8
A
253 254parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
14 16anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
56 59parallel
Strand 3
B
84 90parallel
Strand 4
B
118 121parallel
Strand 5
B
153 156parallel
Strand 6
B
176 180parallel
Strand 7
B
202 206parallel
Strand 8
B
253 254parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 8first strand
Strand 2
C
14 16anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 22first strand
Strand 2
C
56 59parallel
Strand 3
C
84 90parallel
Strand 4
C
118 121parallel
Strand 5
C
153 156parallel
Strand 6
C
176 180parallel
Strand 7
C
202 206parallel
Strand 8
C
253 254parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 8first strand
Strand 2
D
14 16anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 22first strand
Strand 2
D
56 59parallel
Strand 3
D
84 90parallel
Strand 4
D
118 121parallel
Strand 5
D
153 156parallel
Strand 6
D
176 180parallel
Strand 7
D
202 206parallel
Strand 8
D
253 254parallel
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