Analysis of interatomic Contacts of Structural Units in PDB entry:
8WK6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WK6 entry

There are 4 chains in PDB entry 8WK6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	PRO 64	CYS 685
B	TRP 16	PRO 465
D	PRO 64	CYS 685
A	TRP 16	PRO 465

There are106 helices in PDB entry 8WK6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	69	74	Right-handed alpha
Helix 2	AA2	C	79	109	Right-handed alpha
Helix 3	AA3	C	116	121	Right-handed alpha
Helix 4	AA4	C	127	131	Right-handed 310
Helix 5	AA5	C	141	148	Right-handed alpha
Helix 6	AA6	C	148	155	Right-handed alpha
Helix 7	AA7	C	185	188	Right-handed 310
Helix 8	AA8	C	189	203	Right-handed alpha
Helix 9	AA9	C	220	227	Right-handed alpha
Helix 10	AB1	C	228	229	Right-handed 310
Helix 11	AB2	C	230	236	Right-handed 310
Helix 12	AB3	C	289	305	Right-handed alpha
Helix 13	AB4	C	336	340	Right-handed 310
Helix 14	AB5	C	342	346	Right-handed 310
Helix 15	AB6	C	356	369	Right-handed alpha
Helix 16	AB7	C	370	373	Right-handed 310
Helix 17	AB8	C	389	394	Right-handed alpha
Helix 18	AB9	C	395	398	Right-handed 310
Helix 19	AC1	C	412	416	Right-handed 310
Helix 20	AC2	C	420	435	Right-handed alpha
Helix 21	AC3	C	452	457	Right-handed alpha
Helix 22	AC4	C	458	460	Right-handed 310
Helix 23	AC5	C	461	470	Right-handed alpha
Helix 24	AC6	C	502	506	Right-handed 310
Helix 25	AC7	C	537	542	Right-handed alpha
Helix 26	AC8	C	547	561	Right-handed alpha
Helix 27	AC9	C	562	567	Right-handed alpha
Helix 28	AD1	C	607	611	Right-handed alpha
Helix 29	AD2	C	625	629	Right-handed 310
Helix 30	AD3	C	655	659	Right-handed 310
Helix 31	AD4	B	17	28	Right-handed alpha
Helix 32	AD5	B	29	32	Right-handed 310
Helix 33	AD6	B	33	41	Right-handed alpha
Helix 34	AD7	B	45	74	Right-handed alpha
Helix 35	AD8	B	76	88	Right-handed alpha
Helix 36	AD9	B	89	121	Right-handed alpha
Helix 37	AE1	B	122	124	Right-handed 310
Helix 38	AE2	B	130	150	Right-handed alpha
Helix 39	AE3	B	156	185	Right-handed alpha
Helix 40	AE4	B	186	191	Right-handed alpha
Helix 41	AE5	B	203	220	Right-handed alpha
Helix 42	AE6	B	224	229	Right-handed alpha
Helix 43	AE7	B	237	264	Right-handed alpha
Helix 44	AE8	B	265	272	Right-handed alpha
Helix 45	AE9	B	274	284	Right-handed alpha
Helix 46	AF1	B	289	319	Right-handed alpha
Helix 47	AF2	B	324	328	Right-handed 310
Helix 48	AF3	B	337	354	Right-handed alpha
Helix 49	AF4	B	356	381	Right-handed alpha
Helix 50	AF5	B	385	389	Right-handed 310
Helix 51	AF6	B	396	417	Right-handed alpha
Helix 52	AF7	B	420	441	Right-handed alpha
Helix 53	AF8	B	446	461	Right-handed alpha
Helix 54	AF9	D	69	74	Right-handed alpha
Helix 55	AG1	D	79	109	Right-handed alpha
Helix 56	AG2	D	116	121	Right-handed alpha
Helix 57	AG3	D	127	131	Right-handed 310
Helix 58	AG4	D	141	148	Right-handed alpha
Helix 59	AG5	D	148	155	Right-handed alpha
Helix 60	AG6	D	185	188	Right-handed 310
Helix 61	AG7	D	189	203	Right-handed alpha
Helix 62	AG8	D	220	227	Right-handed alpha
Helix 63	AG9	D	228	229	Right-handed 310
Helix 64	AH1	D	230	236	Right-handed 310
Helix 65	AH2	D	289	305	Right-handed alpha
Helix 66	AH3	D	336	340	Right-handed 310
Helix 67	AH4	D	342	346	Right-handed 310
Helix 68	AH5	D	356	369	Right-handed alpha
Helix 69	AH6	D	370	373	Right-handed 310
Helix 70	AH7	D	389	394	Right-handed alpha
Helix 71	AH8	D	395	398	Right-handed 310
Helix 72	AH9	D	412	416	Right-handed 310
Helix 73	AI1	D	420	435	Right-handed alpha
Helix 74	AI2	D	452	457	Right-handed alpha
Helix 75	AI3	D	458	460	Right-handed 310
Helix 76	AI4	D	461	470	Right-handed alpha
Helix 77	AI5	D	502	506	Right-handed 310
Helix 78	AI6	D	537	542	Right-handed alpha
Helix 79	AI7	D	547	561	Right-handed alpha
Helix 80	AI8	D	562	567	Right-handed alpha
Helix 81	AI9	D	607	611	Right-handed alpha
Helix 82	AJ1	D	625	629	Right-handed 310
Helix 83	AJ2	D	655	659	Right-handed 310
Helix 84	AJ3	A	17	28	Right-handed alpha
Helix 85	AJ4	A	29	32	Right-handed 310
Helix 86	AJ5	A	33	41	Right-handed alpha
Helix 87	AJ6	A	45	74	Right-handed alpha
Helix 88	AJ7	A	76	88	Right-handed alpha
Helix 89	AJ8	A	89	121	Right-handed alpha
Helix 90	AJ9	A	122	124	Right-handed 310
Helix 91	AK1	A	130	150	Right-handed alpha
Helix 92	AK2	A	156	185	Right-handed alpha
Helix 93	AK3	A	186	191	Right-handed alpha
Helix 94	AK4	A	203	220	Right-handed alpha
Helix 95	AK5	A	224	229	Right-handed alpha
Helix 96	AK6	A	237	264	Right-handed alpha
Helix 97	AK7	A	265	272	Right-handed alpha
Helix 98	AK8	A	274	284	Right-handed alpha
Helix 99	AK9	A	289	319	Right-handed alpha
Helix 100	AL1	A	324	328	Right-handed 310
Helix 101	AL2	A	337	354	Right-handed alpha
Helix 102	AL3	A	356	381	Right-handed alpha
Helix 103	AL4	A	385	389	Right-handed 310
Helix 104	AL5	A	396	417	Right-handed alpha
Helix 105	AL6	A	420	441	Right-handed alpha
Helix 106	AL7	A	446	461	Right-handed alpha

There are 16 sheets in PDB entry 8WK6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	384	first strand
Strand 2	C	310	314	parallel
Strand 3	C	206	211	parallel
Strand 4	C	159	162	parallel
Strand 5	C	123	126	parallel
Strand 6	C	475	479	parallel
Strand 7	C	442	444	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	170	first strand
Strand 2	C	176	183	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	273	275	anti-parallel
Strand 3	C	264	266	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	245	first strand
Strand 2	C	248	250	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	632	634	first strand
Strand 2	C	617	623	anti-parallel
Strand 3	C	644	651	anti-parallel
Strand 4	C	591	598	anti-parallel
Strand 5	C	579	585	anti-parallel
Strand 6	C	569	572	anti-parallel
Strand 7	C	666	667	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	603	606	first strand
Strand 2	C	636	640	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	675	first strand
Strand 2	C	680	682	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	331	first strand
Strand 2	B	335	336	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	384	first strand
Strand 2	D	310	314	parallel
Strand 3	D	206	211	parallel
Strand 4	D	159	162	parallel
Strand 5	D	123	126	parallel
Strand 6	D	475	479	parallel
Strand 7	D	442	444	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	170	first strand
Strand 2	D	176	183	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	240	first strand
Strand 2	D	273	275	anti-parallel
Strand 3	D	264	266	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	245	first strand
Strand 2	D	248	250	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	632	634	first strand
Strand 2	D	617	623	anti-parallel
Strand 3	D	644	651	anti-parallel
Strand 4	D	591	598	anti-parallel
Strand 5	D	579	585	anti-parallel
Strand 6	D	569	572	anti-parallel
Strand 7	D	666	667	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	603	606	first strand
Strand 2	D	636	640	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	673	675	first strand
Strand 2	D	680	682	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	331	first strand
Strand 2	A	335	336	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WK6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WK6