Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WKB entry

There are 4 chains in PDB entry 8WKB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 27	SER 208
B	LYS 27	ALA 207
C	LYS 27	SER 208
D	LYS 27	SER 208

There are 6 helices in PDB entry 8WKB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	149	153	Right-handed 310
Helix 2	AA2	B	52	56	Right-handed 310
Helix 3	AA3	B	146	153	Right-handed 310
Helix 4	AA4	C	149	153	Right-handed 310
Helix 5	AA5	D	52	56	Right-handed 310
Helix 6	AA6	D	146	153	Right-handed 310

There are 15 sheets in PDB entry 8WKB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	108	first strand
Strand 2	A	86	90	anti-parallel
Strand 3	A	44	49	anti-parallel
Strand 4	A	202	206	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	64	first strand
Strand 2	A	67	75	anti-parallel
Strand 3	A	190	196	anti-parallel
Strand 4	A	180	187	anti-parallel
Strand 5	A	164	167	anti-parallel
Strand 6	A	155	157	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	A	136	137	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	108	first strand
Strand 2	B	86	90	anti-parallel
Strand 3	B	44	49	anti-parallel
Strand 4	B	202	206	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	64	first strand
Strand 2	B	67	75	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	136	137	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	158	first strand
Strand 2	B	163	167	anti-parallel
Strand 3	B	180	187	anti-parallel
Strand 4	B	190	196	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	49	first strand
Strand 2	C	201	206	anti-parallel
Strand 3	C	163	167	anti-parallel
Strand 4	C	180	187	anti-parallel
Strand 5	C	190	196	anti-parallel
Strand 6	C	67	75	anti-parallel
Strand 7	C	59	64	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	49	first strand
Strand 2	C	201	206	anti-parallel
Strand 3	C	163	167	anti-parallel
Strand 4	C	155	157	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	105	108	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	136	137	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	108	first strand
Strand 2	D	86	89	anti-parallel
Strand 3	D	44	49	anti-parallel
Strand 4	D	202	206	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	64	first strand
Strand 2	D	67	75	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	D	136	137	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	158	first strand
Strand 2	D	163	167	anti-parallel
Strand 3	D	180	187	anti-parallel
Strand 4	D	190	196	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WKB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKB