Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WKC entry

There is 1 chain in PDB entry 8WKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7ILE 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8WKC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 34Right-handed alpha
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
75 82Right-handed alpha
Helix 4
AA4
A
90 105Right-handed alpha
Helix 5
AA5
A
107 109Right-handed 310
Helix 6
AA6
A
161 165Right-handed 310
Helix 7
AA7
A
173 175Right-handed 310
Helix 8
AA8
A
193 204Right-handed alpha
Helix 9
AA9
A
229 239Right-handed alpha
Helix 10
AB1
A
239 250Right-handed alpha
Helix 11
AB2
A
262 266Right-handed 310
Helix 12
AB3
A
267 282Right-handed alpha
Helix 13
AB4
A
283 290Right-handed alpha
Helix 14
AB5
A
298 317Right-handed alpha
Helix 15
AB6
A
319 326Right-handed alpha
Helix 16
AB7
A
342 348Right-handed 310
Helix 17
AB8
A
391 397Right-handed alpha
Helix 18
AB9
A
401 405Right-handed 310
Helix 19
AC1
A
406 411Right-handed alpha
Helix 20
AC2
A
442 462Right-handed alpha
Helix 21
AC3
A
470 487Right-handed alpha
Helix 22
AC4
A
488 493Right-handed 310
Helix 23
AC5
A
495 499Right-handed 310
Helix 24
AC6
A
514 529Right-handed alpha
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There are 5 sheets in PDB entry 8WKC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
40 43parallel
Strand 3
A
12 19parallel
Strand 4
A
138 146parallel
Strand 5
A
128 133anti-parallel
Strand 6
A
117 123anti-parallel
Strand 7
A
398 400parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
40 43parallel
Strand 3
A
12 19parallel
Strand 4
A
138 146parallel
Strand 5
A
429 431parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
380 383parallel
Strand 3
A
186 190parallel
Strand 4
A
209 214parallel
Strand 5
A
351 355parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 364first strand
Strand 2
A
368 371anti-parallel
Strand 3
A
374 377anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 469first strand
Strand 2
A
534 535anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il