Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WKJ entry

There is 1 chain in PDB entry 8WKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8WKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed alpha
Helix 2
AA2
A
16 30Right-handed alpha
Helix 3
AA3
A
47 60Right-handed alpha
Helix 4
AA4
A
71 87Right-handed alpha
Helix 5
AA5
A
91 93Right-handed 310
Helix 6
AA6
A
99 113Right-handed alpha
Helix 7
AA7
A
127 136Right-handed alpha
Helix 8
AA8
A
146 150Right-handed 310
Helix 9
AA9
A
154 162Right-handed alpha
Helix 10
AB1
A
183 196Right-handed alpha
Helix 11
AB2
A
219 224Right-handed alpha
Helix 12
AB3
A
225 229Right-handed 310
Helix 13
AB4
A
243 247Right-handed 310
Helix 14
AB5
A
254 267Right-handed alpha
Helix 15
AB6
A
273 286Right-handed alpha
Helix 16
AB7
A
288 312Right-handed alpha
Helix 17
AB8
A
330 338Right-handed alpha
Helix 18
AB9
A
341 354Right-handed alpha
Helix 19
AC1
A
361 364Right-handed 310
Helix 20
AC2
A
376 392Right-handed alpha
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There are 3 sheets in PDB entry 8WKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
355 356parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
249 252anti-parallel
Strand 3
A
231 236anti-parallel
Strand 4
A
201 205parallel
Strand 5
A
166 172parallel
Strand 6
A
118 122parallel
Strand 7
A
139 143parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
369 372anti-parallel
Strand 3
A
358 359anti-parallel
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