Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WKL entry

There are 5 chains in PDB entry 8WKL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 31	TYR 333
B	LYS 32	TYR 333
C	LYS 32	TYR 333
D	LYS 32	TYR 333
E	LYS 32	ALA 87

There are 40 helices in PDB entry 8WKL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	90	Right-handed alpha
Helix 2	AA2	A	94	96	Right-handed 310
Helix 3	AA3	A	97	102	Right-handed alpha
Helix 4	AA4	A	175	183	Right-handed alpha
Helix 5	AA5	A	226	228	Right-handed 310
Helix 6	AA6	B	85	90	Right-handed alpha
Helix 7	AA7	B	94	96	Right-handed 310
Helix 8	AA8	B	97	102	Right-handed alpha
Helix 9	AA9	B	175	183	Right-handed alpha
Helix 10	AB1	B	226	228	Right-handed 310
Helix 11	AB2	C	85	90	Right-handed alpha
Helix 12	AB3	C	94	96	Right-handed 310
Helix 13	AB4	C	97	102	Right-handed alpha
Helix 14	AB5	C	175	183	Right-handed alpha
Helix 15	AB6	C	226	228	Right-handed 310
Helix 16	AB7	D	85	90	Right-handed alpha
Helix 17	AB8	D	94	96	Right-handed 310
Helix 18	AB9	D	97	102	Right-handed alpha
Helix 19	AC1	D	175	183	Right-handed alpha
Helix 20	AC2	D	226	228	Right-handed 310
Helix 21	AC3	E	85	90	Right-handed alpha
Helix 22	AC4	E	94	96	Right-handed 310
Helix 23	AC5	E	97	102	Right-handed alpha
Helix 24	AC6	E	175	183	Right-handed alpha
Helix 25	AC7	E	226	228	Right-handed 310
Helix 26	AC8	F	85	90	Right-handed alpha
Helix 27	AC9	F	94	96	Right-handed 310
Helix 28	AD1	F	97	102	Right-handed alpha
Helix 29	AD2	F	175	183	Right-handed alpha
Helix 30	AD3	F	226	228	Right-handed 310
Helix 31	AD4	G	85	90	Right-handed alpha
Helix 32	AD5	G	94	96	Right-handed 310
Helix 33	AD6	G	97	102	Right-handed alpha
Helix 34	AD7	G	175	183	Right-handed alpha
Helix 35	AD8	G	226	228	Right-handed 310
Helix 36	AD9	H	85	90	Right-handed alpha
Helix 37	AE1	H	94	96	Right-handed 310
Helix 38	AE2	H	97	102	Right-handed alpha
Helix 39	AE3	H	175	183	Right-handed alpha
Helix 40	AE4	H	226	228	Right-handed 310

There are 52 sheets in PDB entry 8WKL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	314	first strand
Strand 2	A	317	321	anti-parallel
Strand 3	A	327	332	anti-parallel
Strand 4	A	32	37	anti-parallel
Strand 5	B	33	37	parallel
Strand 6	B	327	332	anti-parallel
Strand 7	B	317	321	anti-parallel
Strand 8	B	310	314	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	55	58	anti-parallel
Strand 3	A	63	69	anti-parallel
Strand 4	A	73	79	anti-parallel
Strand 5	A	133	134	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	110	first strand
Strand 2	A	115	120	anti-parallel
Strand 3	A	124	128	anti-parallel
Strand 4	A	136	139	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	145	146	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	155	first strand
Strand 2	A	162	166	anti-parallel
Strand 3	A	187	193	anti-parallel
Strand 4	A	198	206	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	214	first strand
Strand 2	A	220	225	anti-parallel
Strand 3	A	230	235	anti-parallel
Strand 4	A	244	249	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	258	first strand
Strand 2	A	264	271	anti-parallel
Strand 3	A	280	287	anti-parallel
Strand 4	A	293	298	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	55	58	anti-parallel
Strand 3	B	63	69	anti-parallel
Strand 4	B	73	79	anti-parallel
Strand 5	B	133	134	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	110	first strand
Strand 2	B	115	120	anti-parallel
Strand 3	B	124	128	anti-parallel
Strand 4	B	136	139	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	145	146	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	155	first strand
Strand 2	B	162	166	anti-parallel
Strand 3	B	187	193	anti-parallel
Strand 4	B	198	206	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	214	first strand
Strand 2	B	220	225	anti-parallel
Strand 3	B	230	235	anti-parallel
Strand 4	B	244	249	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	258	first strand
Strand 2	B	264	272	anti-parallel
Strand 3	B	279	287	anti-parallel
Strand 4	B	293	298	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	314	first strand
Strand 2	C	317	321	anti-parallel
Strand 3	C	327	332	anti-parallel
Strand 4	C	33	37	anti-parallel
Strand 5	D	33	37	parallel
Strand 6	D	327	332	anti-parallel
Strand 7	D	317	321	anti-parallel
Strand 8	D	310	314	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	55	58	anti-parallel
Strand 3	C	63	69	anti-parallel
Strand 4	C	73	79	anti-parallel
Strand 5	C	133	134	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	110	first strand
Strand 2	C	115	120	anti-parallel
Strand 3	C	124	128	anti-parallel
Strand 4	C	136	139	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	145	146	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	155	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	187	193	anti-parallel
Strand 4	C	198	206	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	214	first strand
Strand 2	C	220	225	anti-parallel
Strand 3	C	230	235	anti-parallel
Strand 4	C	244	249	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	258	first strand
Strand 2	C	264	271	anti-parallel
Strand 3	C	280	287	anti-parallel
Strand 4	C	293	298	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	55	58	anti-parallel
Strand 3	D	63	69	anti-parallel
Strand 4	D	73	79	anti-parallel
Strand 5	D	133	134	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	110	first strand
Strand 2	D	115	120	anti-parallel
Strand 3	D	124	128	anti-parallel
Strand 4	D	136	139	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	145	146	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	155	first strand
Strand 2	D	162	166	anti-parallel
Strand 3	D	187	193	anti-parallel
Strand 4	D	198	206	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	214	first strand
Strand 2	D	220	225	anti-parallel
Strand 3	D	230	235	anti-parallel
Strand 4	D	244	249	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	258	first strand
Strand 2	D	264	271	anti-parallel
Strand 3	D	280	287	anti-parallel
Strand 4	D	293	298	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	310	314	first strand
Strand 2	E	317	321	anti-parallel
Strand 3	E	327	332	anti-parallel
Strand 4	E	33	37	anti-parallel
Strand 5	F	32	37	parallel
Strand 6	F	327	332	anti-parallel
Strand 7	F	317	321	anti-parallel
Strand 8	F	310	314	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	47	first strand
Strand 2	E	55	58	anti-parallel
Strand 3	E	63	69	anti-parallel
Strand 4	E	73	79	anti-parallel
Strand 5	E	133	134	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	110	first strand
Strand 2	E	115	120	anti-parallel
Strand 3	E	124	128	anti-parallel
Strand 4	E	136	139	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	142	first strand
Strand 2	E	145	146	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	155	first strand
Strand 2	E	162	166	anti-parallel
Strand 3	E	187	193	anti-parallel
Strand 4	E	198	206	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	211	214	first strand
Strand 2	E	220	225	anti-parallel
Strand 3	E	230	235	anti-parallel
Strand 4	E	244	249	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	253	258	first strand
Strand 2	E	264	271	anti-parallel
Strand 3	E	280	287	anti-parallel
Strand 4	E	293	298	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	47	first strand
Strand 2	F	55	58	anti-parallel
Strand 3	F	63	69	anti-parallel
Strand 4	F	73	79	anti-parallel
Strand 5	F	133	134	parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	110	first strand
Strand 2	F	115	120	anti-parallel
Strand 3	F	124	128	anti-parallel
Strand 4	F	136	139	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	142	first strand
Strand 2	F	145	146	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	155	first strand
Strand 2	F	162	166	anti-parallel
Strand 3	F	187	193	anti-parallel
Strand 4	F	198	206	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	211	214	first strand
Strand 2	F	220	225	anti-parallel
Strand 3	F	230	235	anti-parallel
Strand 4	F	244	249	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	253	258	first strand
Strand 2	F	264	271	anti-parallel
Strand 3	F	280	287	anti-parallel
Strand 4	F	293	298	anti-parallel

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There are 8 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	310	314	first strand
Strand 2	G	317	321	anti-parallel
Strand 3	G	327	333	anti-parallel
Strand 4	G	31	37	anti-parallel
Strand 5	H	31	37	parallel
Strand 6	H	327	332	anti-parallel
Strand 7	H	317	321	anti-parallel
Strand 8	H	310	314	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	47	first strand
Strand 2	G	55	58	anti-parallel
Strand 3	G	63	67	anti-parallel
Strand 4	G	74	79	anti-parallel
Strand 5	G	133	134	parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	104	110	first strand
Strand 2	G	115	120	anti-parallel
Strand 3	G	124	128	anti-parallel
Strand 4	G	136	139	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	141	142	first strand
Strand 2	G	145	146	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	155	first strand
Strand 2	G	162	166	anti-parallel
Strand 3	G	187	193	anti-parallel
Strand 4	G	198	206	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	211	214	first strand
Strand 2	G	220	225	anti-parallel
Strand 3	G	230	235	anti-parallel
Strand 4	G	244	249	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	253	258	first strand
Strand 2	G	264	271	anti-parallel
Strand 3	G	280	287	anti-parallel
Strand 4	G	293	298	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	47	first strand
Strand 2	H	55	58	anti-parallel
Strand 3	H	63	69	anti-parallel
Strand 4	H	73	79	anti-parallel
Strand 5	H	133	134	parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	110	first strand
Strand 2	H	115	120	anti-parallel
Strand 3	H	124	128	anti-parallel
Strand 4	H	136	139	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	141	142	first strand
Strand 2	H	145	146	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	155	first strand
Strand 2	H	162	166	anti-parallel
Strand 3	H	187	193	anti-parallel
Strand 4	H	198	206	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	211	214	first strand
Strand 2	H	220	225	anti-parallel
Strand 3	H	230	235	anti-parallel
Strand 4	H	244	249	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	253	258	first strand
Strand 2	H	264	271	anti-parallel
Strand 3	H	280	287	anti-parallel
Strand 4	H	293	298	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WKL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKL