Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WKN entry

There are 5 chains in PDB entry 8WKN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 22	ILE 1005
A	SER 8	ILE 1005
C	ASP 23	ASN 299
D	ASP 23	ASN 299
E	ALA 10	ASP 120

There are150 helices in PDB entry 8WKN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	23	40	Right-handed alpha
Helix 2	AA2	B	48	54	Right-handed alpha
Helix 3	AA3	B	58	71	Right-handed alpha
Helix 4	AA4	B	80	96	Right-handed alpha
Helix 5	AA5	B	97	109	Right-handed alpha
Helix 6	AA6	B	115	123	Right-handed alpha
Helix 7	AA7	B	136	141	Right-handed alpha
Helix 8	AA8	B	155	160	Right-handed alpha
Helix 9	AA9	B	179	183	Right-handed 310
Helix 10	AB1	B	186	192	Right-handed alpha
Helix 11	AB2	B	192	197	Right-handed alpha
Helix 12	AB3	B	197	211	Right-handed alpha
Helix 13	AB4	B	222	233	Right-handed alpha
Helix 14	AB5	B	254	264	Right-handed alpha
Helix 15	AB6	B	282	296	Right-handed alpha
Helix 16	AB7	B	304	317	Right-handed alpha
Helix 17	AB8	B	318	321	Right-handed 310
Helix 18	AB9	B	326	328	Right-handed 310
Helix 19	AC1	B	329	334	Right-handed alpha
Helix 20	AC2	B	355	366	Right-handed alpha
Helix 21	AC3	B	368	373	Right-handed 310
Helix 22	AC4	B	374	391	Right-handed alpha
Helix 23	AC5	B	411	416	Right-handed alpha
Helix 24	AC6	B	417	427	Right-handed alpha
Helix 25	AC7	B	431	445	Right-handed alpha
Helix 26	AC8	B	447	462	Right-handed alpha
Helix 27	AC9	B	468	496	Right-handed alpha
Helix 28	AD1	B	508	519	Right-handed alpha
Helix 29	AD2	B	523	527	Right-handed 310
Helix 30	AD3	B	532	539	Right-handed alpha
Helix 31	AD4	B	540	547	Right-handed 310
Helix 32	AD5	B	548	550	Right-handed 310
Helix 33	AD6	B	551	572	Right-handed alpha
Helix 34	AD7	B	580	598	Right-handed alpha
Helix 35	AD8	B	600	604	Right-handed 310
Helix 36	AD9	B	605	628	Right-handed alpha
Helix 37	AE1	B	635	639	Right-handed 310
Helix 38	AE2	B	648	659	Right-handed alpha
Helix 39	AE3	B	660	671	Right-handed alpha
Helix 40	AE4	B	672	676	Right-handed 310
Helix 41	AE5	B	680	699	Right-handed alpha
Helix 42	AE6	B	705	723	Right-handed alpha
Helix 43	AE7	B	724	726	Right-handed 310
Helix 44	AE8	B	729	742	Right-handed alpha
Helix 45	AE9	B	750	763	Right-handed alpha
Helix 46	AF1	B	768	786	Right-handed alpha
Helix 47	AF2	B	800	812	Right-handed alpha
Helix 48	AF3	B	817	826	Right-handed alpha
Helix 49	AF4	B	831	841	Right-handed alpha
Helix 50	AF5	B	842	845	Right-handed 310
Helix 51	AF6	B	846	855	Right-handed alpha
Helix 52	AF7	B	862	872	Right-handed alpha
Helix 53	AF8	B	878	896	Right-handed alpha
Helix 54	AF9	B	911	922	Right-handed alpha
Helix 55	AG1	B	928	933	Right-handed 310
Helix 56	AG2	B	937	945	Right-handed alpha
Helix 57	AG3	B	950	954	Right-handed 310
Helix 58	AG4	B	955	962	Right-handed 310
Helix 59	AG5	B	963	973	Right-handed alpha
Helix 60	AG6	B	976	991	Right-handed alpha
Helix 61	AG7	B	994	1003	Right-handed alpha
Helix 62	AG8	A	10	21	Right-handed alpha
Helix 63	AG9	A	23	40	Right-handed alpha
Helix 64	AH1	A	48	53	Right-handed alpha
Helix 65	AH2	A	58	72	Right-handed alpha
Helix 66	AH3	A	80	95	Right-handed alpha
Helix 67	AH4	A	96	107	Right-handed alpha
Helix 68	AH5	A	115	124	Right-handed alpha
Helix 69	AH6	A	136	146	Right-handed alpha
Helix 70	AH7	A	154	158	Right-handed 310
Helix 71	AH8	A	186	192	Right-handed alpha
Helix 72	AH9	A	192	197	Right-handed alpha
Helix 73	AI1	A	197	211	Right-handed alpha
Helix 74	AI2	A	222	233	Right-handed alpha
Helix 75	AI3	A	254	263	Right-handed alpha
Helix 76	AI4	A	282	298	Right-handed alpha
Helix 77	AI5	A	304	317	Right-handed alpha
Helix 78	AI6	A	318	322	Right-handed 310
Helix 79	AI7	A	326	334	Right-handed alpha
Helix 80	AI8	A	355	366	Right-handed alpha
Helix 81	AI9	A	368	372	Right-handed 310
Helix 82	AJ1	A	374	391	Right-handed alpha
Helix 83	AJ2	A	411	416	Right-handed alpha
Helix 84	AJ3	A	417	427	Right-handed alpha
Helix 85	AJ4	A	431	445	Right-handed alpha
Helix 86	AJ5	A	447	462	Right-handed alpha
Helix 87	AJ6	A	467	494	Right-handed alpha
Helix 88	AJ7	A	508	519	Right-handed alpha
Helix 89	AJ8	A	532	539	Right-handed alpha
Helix 90	AJ9	A	540	547	Right-handed 310
Helix 91	AK1	A	551	558	Right-handed alpha
Helix 92	AK2	A	559	563	Right-handed 310
Helix 93	AK3	A	579	598	Right-handed alpha
Helix 94	AK4	A	600	604	Right-handed 310
Helix 95	AK5	A	605	634	Right-handed alpha
Helix 96	AK6	A	648	659	Right-handed alpha
Helix 97	AK7	A	660	671	Right-handed alpha
Helix 98	AK8	A	680	701	Right-handed alpha
Helix 99	AK9	A	705	723	Right-handed alpha
Helix 100	AL1	A	724	726	Right-handed 310
Helix 101	AL2	A	729	742	Right-handed alpha
Helix 102	AL3	A	750	762	Right-handed alpha
Helix 103	AL4	A	768	786	Right-handed alpha
Helix 104	AL5	A	801	812	Right-handed alpha
Helix 105	AL6	A	817	826	Right-handed alpha
Helix 106	AL7	A	831	841	Right-handed alpha
Helix 107	AL8	A	842	845	Right-handed 310
Helix 108	AL9	A	846	855	Right-handed alpha
Helix 109	AM1	A	861	872	Right-handed alpha
Helix 110	AM2	A	878	896	Right-handed alpha
Helix 111	AM3	A	912	922	Right-handed alpha
Helix 112	AM4	A	928	933	Right-handed 310
Helix 113	AM5	A	937	945	Right-handed alpha
Helix 114	AM6	A	950	954	Right-handed 310
Helix 115	AM7	A	955	961	Right-handed 310
Helix 116	AM8	A	963	972	Right-handed alpha
Helix 117	AM9	A	977	991	Right-handed alpha
Helix 118	AN1	A	993	1004	Right-handed alpha
Helix 119	AN2	C	25	39	Right-handed alpha
Helix 120	AN3	C	48	54	Right-handed alpha
Helix 121	AN4	C	58	72	Right-handed alpha
Helix 122	AN5	C	80	96	Right-handed alpha
Helix 123	AN6	C	97	109	Right-handed alpha
Helix 124	AN7	C	115	123	Right-handed alpha
Helix 125	AN8	C	136	145	Right-handed alpha
Helix 126	AN9	C	154	159	Right-handed alpha
Helix 127	AO1	C	173	177	Right-handed 310
Helix 128	AO2	C	186	192	Right-handed alpha
Helix 129	AO3	C	192	197	Right-handed alpha
Helix 130	AO4	C	197	211	Right-handed alpha
Helix 131	AO5	C	223	235	Right-handed alpha
Helix 132	AO6	C	254	264	Right-handed alpha
Helix 133	AO7	C	272	274	Right-handed 310
Helix 134	AO8	C	281	297	Right-handed alpha
Helix 135	AO9	D	25	39	Right-handed alpha
Helix 136	AP1	D	48	54	Right-handed alpha
Helix 137	AP2	D	58	71	Right-handed alpha
Helix 138	AP3	D	80	96	Right-handed alpha
Helix 139	AP4	D	97	109	Right-handed alpha
Helix 140	AP5	D	115	124	Right-handed alpha
Helix 141	AP6	D	136	145	Right-handed alpha
Helix 142	AP7	D	154	161	Right-handed 310
Helix 143	AP8	D	173	177	Right-handed 310
Helix 144	AP9	D	186	192	Right-handed alpha
Helix 145	AQ1	D	192	197	Right-handed alpha
Helix 146	AQ2	D	197	211	Right-handed alpha
Helix 147	AQ3	D	222	234	Right-handed alpha
Helix 148	AQ4	D	254	264	Right-handed alpha
Helix 149	AQ5	D	281	297	Right-handed alpha
Helix 150	AQ6	E	95	106	Right-handed alpha

There are 12 sheets in PDB entry 8WKN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel
Strand 6	B	244	247	parallel
Strand 7	B	267	270	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	345	348	anti-parallel
Strand 3	B	395	396	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	575	first strand
Strand 2	E	15	17	anti-parallel
Strand 3	E	22	24	anti-parallel
Strand 4	E	112	113	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	128	131	parallel
Strand 4	A	43	46	parallel
Strand 5	A	213	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	395	396	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	128	131	parallel
Strand 3	C	43	46	parallel
Strand 4	C	213	216	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	247	first strand
Strand 2	C	267	270	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	169	first strand
Strand 2	D	128	131	parallel
Strand 3	D	43	46	parallel
Strand 4	D	213	215	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	247	first strand
Strand 2	D	267	270	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	37	38	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	62	68	anti-parallel
Strand 3	E	42	48	anti-parallel
Strand 4	E	115	118	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	93	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WKN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKN