Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WKO entry

There are 4 chains in PDB entry 8WKO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3THR 210
A
 PHE 213VAL 429
B
 THR 4THR 210
B
 PHE 213VAL 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8WKO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 18Right-handed alpha
Helix 2
AA2
A
41 51Right-handed alpha
Helix 3
AA3
A
64 79Right-handed alpha
Helix 4
AA4
A
88 101Right-handed alpha
Helix 5
AA5
A
114 123Right-handed alpha
Helix 6
AA6
A
125 128Right-handed 310
Helix 7
AA7
A
140 147Right-handed alpha
Helix 8
AA8
A
168 178Right-handed alpha
Helix 9
AA9
A
196 200Right-handed 310
Helix 10
AB1
A
232 237Right-handed alpha
Helix 11
AB2
A
239 244Right-handed alpha
Helix 12
AB3
A
253 259Right-handed 310
Helix 13
AB4
A
260 269Right-handed alpha
Helix 14
AB5
A
269 275Right-handed alpha
Helix 15
AB6
A
279 291Right-handed alpha
Helix 16
AB7
A
292 314Right-handed alpha
Helix 17
AB8
A
330 338Right-handed alpha
Helix 18
AB9
A
352 364Right-handed alpha
Helix 19
AC1
A
382 386Right-handed 310
Helix 20
AC2
A
393 399Right-handed alpha
Helix 21
AC3
A
414 428Right-handed alpha
Helix 22
AC4
B
10 18Right-handed alpha
Helix 23
AC5
B
42 51Right-handed alpha
Helix 24
AC6
B
64 79Right-handed alpha
Helix 25
AC7
B
88 101Right-handed alpha
Helix 26
AC8
B
114 123Right-handed alpha
Helix 27
AC9
B
140 147Right-handed alpha
Helix 28
AD1
B
168 178Right-handed alpha
Helix 29
AD2
B
190 195Right-handed alpha
Helix 30
AD3
B
196 200Right-handed 310
Helix 31
AD4
B
232 237Right-handed alpha
Helix 32
AD5
B
253 259Right-handed 310
Helix 33
AD6
B
260 269Right-handed alpha
Helix 34
AD7
B
269 275Right-handed alpha
Helix 35
AD8
B
279 291Right-handed alpha
Helix 36
AD9
B
292 313Right-handed alpha
Helix 37
AE1
B
330 338Right-handed alpha
Helix 38
AE2
B
352 362Right-handed alpha
Helix 39
AE3
B
382 386Right-handed 310
Helix 40
AE4
B
392 397Right-handed alpha
Helix 41
AE5
B
398 400Right-handed 310
Helix 42
AE6
B
414 427Right-handed alpha
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There are 4 sheets in PDB entry 8WKO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 86first strand
Strand 2
A
223 227anti-parallel
Strand 3
A
204 208anti-parallel
Strand 4
A
182 186parallel
Strand 5
A
151 157parallel
Strand 6
A
105 110parallel
Strand 7
A
130 135parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 321first strand
Strand 2
A
345 350anti-parallel
Strand 3
A
405 409anti-parallel
Strand 4
A
378 381anti-parallel
Strand 5
A
367 369parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 86first strand
Strand 2
B
223 227anti-parallel
Strand 3
B
204 207anti-parallel
Strand 4
B
182 186parallel
Strand 5
B
151 157parallel
Strand 6
B
106 110parallel
Strand 7
B
132 135parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 321first strand
Strand 2
B
345 350anti-parallel
Strand 3
B
405 409anti-parallel
Strand 4
B
378 381anti-parallel
Strand 5
B
367 369parallel
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