Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WKR entry

There are 8 chains in PDB entry 8WKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5THR 210
A
 PHE 213VAL 429
B
 ASN 5THR 210
B
 PHE 213VAL 429
C
 ASN 5THR 210
C
 PHE 213VAL 429
D
 ASN 5THR 210
D
 PHE 213VAL 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 8WKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 18Right-handed alpha
Helix 2
AA2
A
64 78Right-handed alpha
Helix 3
AA3
A
88 99Right-handed alpha
Helix 4
AA4
A
114 123Right-handed alpha
Helix 5
AA5
A
123 128Right-handed alpha
Helix 6
AA6
A
140 147Right-handed alpha
Helix 7
AA7
A
168 179Right-handed alpha
Helix 8
AA8
A
190 195Right-handed alpha
Helix 9
AA9
A
196 200Right-handed 310
Helix 10
AB1
A
232 237Right-handed alpha
Helix 11
AB2
A
239 244Right-handed alpha
Helix 12
AB3
A
246 250Right-handed 310
Helix 13
AB4
A
253 259Right-handed 310
Helix 14
AB5
A
260 269Right-handed alpha
Helix 15
AB6
A
269 275Right-handed alpha
Helix 16
AB7
A
279 291Right-handed alpha
Helix 17
AB8
A
292 313Right-handed alpha
Helix 18
AB9
A
330 338Right-handed alpha
Helix 19
AC1
A
352 364Right-handed alpha
Helix 20
AC2
A
382 386Right-handed 310
Helix 21
AC3
A
392 399Right-handed alpha
Helix 22
AC4
A
414 427Right-handed alpha
Helix 23
AC5
B
10 18Right-handed alpha
Helix 24
AC6
B
64 78Right-handed alpha
Helix 25
AC7
B
88 101Right-handed alpha
Helix 26
AC8
B
114 123Right-handed alpha
Helix 27
AC9
B
140 147Right-handed alpha
Helix 28
AD1
B
168 179Right-handed alpha
Helix 29
AD2
B
190 195Right-handed alpha
Helix 30
AD3
B
196 200Right-handed 310
Helix 31
AD4
B
232 237Right-handed alpha
Helix 32
AD5
B
239 244Right-handed alpha
Helix 33
AD6
B
246 250Right-handed 310
Helix 34
AD7
B
253 259Right-handed 310
Helix 35
AD8
B
260 269Right-handed alpha
Helix 36
AD9
B
269 275Right-handed alpha
Helix 37
AE1
B
279 291Right-handed alpha
Helix 38
AE2
B
292 313Right-handed alpha
Helix 39
AE3
B
330 338Right-handed alpha
Helix 40
AE4
B
352 364Right-handed alpha
Helix 41
AE5
B
382 386Right-handed 310
Helix 42
AE6
B
392 399Right-handed alpha
Helix 43
AE7
B
414 427Right-handed alpha
Helix 44
AE8
C
10 18Right-handed alpha
Helix 45
AE9
C
64 78Right-handed alpha
Helix 46
AF1
C
88 99Right-handed alpha
Helix 47
AF2
C
114 123Right-handed alpha
Helix 48
AF3
C
125 129Right-handed 310
Helix 49
AF4
C
140 147Right-handed alpha
Helix 50
AF5
C
168 179Right-handed alpha
Helix 51
AF6
C
190 195Right-handed alpha
Helix 52
AF7
C
196 200Right-handed 310
Helix 53
AF8
C
232 237Right-handed alpha
Helix 54
AF9
C
239 244Right-handed alpha
Helix 55
AG1
C
246 250Right-handed 310
Helix 56
AG2
C
253 259Right-handed 310
Helix 57
AG3
C
260 269Right-handed alpha
Helix 58
AG4
C
269 275Right-handed alpha
Helix 59
AG5
C
279 291Right-handed alpha
Helix 60
AG6
C
292 313Right-handed alpha
Helix 61
AG7
C
330 338Right-handed alpha
Helix 62
AG8
C
352 364Right-handed alpha
Helix 63
AG9
C
382 386Right-handed 310
Helix 64
AH1
C
392 399Right-handed alpha
Helix 65
AH2
C
414 427Right-handed alpha
Helix 66
AH3
D
10 18Right-handed alpha
Helix 67
AH4
D
64 78Right-handed alpha
Helix 68
AH5
D
88 101Right-handed alpha
Helix 69
AH6
D
114 123Right-handed alpha
Helix 70
AH7
D
125 129Right-handed 310
Helix 71
AH8
D
140 147Right-handed alpha
Helix 72
AH9
D
168 179Right-handed alpha
Helix 73
AI1
D
190 195Right-handed alpha
Helix 74
AI2
D
196 200Right-handed 310
Helix 75
AI3
D
232 237Right-handed alpha
Helix 76
AI4
D
239 244Right-handed alpha
Helix 77
AI5
D
246 250Right-handed 310
Helix 78
AI6
D
253 259Right-handed 310
Helix 79
AI7
D
260 269Right-handed alpha
Helix 80
AI8
D
269 275Right-handed alpha
Helix 81
AI9
D
279 291Right-handed alpha
Helix 82
AJ1
D
292 313Right-handed alpha
Helix 83
AJ2
D
330 338Right-handed alpha
Helix 84
AJ3
D
352 364Right-handed alpha
Helix 85
AJ4
D
382 386Right-handed 310
Helix 86
AJ5
D
392 399Right-handed alpha
Helix 87
AJ6
D
414 428Right-handed alpha
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There are 8 sheets in PDB entry 8WKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 86first strand
Strand 2
A
223 227anti-parallel
Strand 3
A
204 208anti-parallel
Strand 4
A
182 186parallel
Strand 5
A
151 157parallel
Strand 6
A
106 110parallel
Strand 7
A
131 135parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 321first strand
Strand 2
A
345 350anti-parallel
Strand 3
A
406 409anti-parallel
Strand 4
A
379 381anti-parallel
Strand 5
A
368 369parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 86first strand
Strand 2
B
223 227anti-parallel
Strand 3
B
204 208anti-parallel
Strand 4
B
182 186parallel
Strand 5
B
151 157parallel
Strand 6
B
106 110parallel
Strand 7
B
131 135parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 321first strand
Strand 2
B
345 350anti-parallel
Strand 3
B
406 409anti-parallel
Strand 4
B
379 381anti-parallel
Strand 5
B
368 369parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 86first strand
Strand 2
C
223 227anti-parallel
Strand 3
C
204 208anti-parallel
Strand 4
C
182 186parallel
Strand 5
C
151 157parallel
Strand 6
C
106 110parallel
Strand 7
C
131 135parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
317 321first strand
Strand 2
C
345 350anti-parallel
Strand 3
C
406 409anti-parallel
Strand 4
C
379 381anti-parallel
Strand 5
C
368 369parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
82 86first strand
Strand 2
D
223 227anti-parallel
Strand 3
D
204 208anti-parallel
Strand 4
D
182 186parallel
Strand 5
D
151 157parallel
Strand 6
D
106 110parallel
Strand 7
D
131 135parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
317 321first strand
Strand 2
D
345 350anti-parallel
Strand 3
D
406 409anti-parallel
Strand 4
D
379 381anti-parallel
Strand 5
D
368 369parallel
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