Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WKS entry

There are 8 chains in PDB entry 8WKS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 22	ILE 1005
B	ALA 9	VAL 234
C	ALA 9	VAL 234
D	LEU 22	ILE 1005
E	ALA 9	VAL 234
F	LEU 22	ILE 1005
G	ALA 9	VAL 234
H	LEU 22	ILE 1005

There are240 helices in PDB entry 8WKS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	40	Right-handed alpha
Helix 2	AA2	A	47	53	Right-handed alpha
Helix 3	AA3	A	58	72	Right-handed alpha
Helix 4	AA4	A	80	95	Right-handed alpha
Helix 5	AA5	A	96	109	Right-handed alpha
Helix 6	AA6	A	115	122	Right-handed alpha
Helix 7	AA7	A	123	125	Right-handed 310
Helix 8	AA8	A	136	145	Right-handed alpha
Helix 9	AA9	A	186	192	Right-handed alpha
Helix 10	AB1	A	192	197	Right-handed alpha
Helix 11	AB2	A	197	211	Right-handed alpha
Helix 12	AB3	A	222	235	Right-handed alpha
Helix 13	AB4	A	254	264	Right-handed alpha
Helix 14	AB5	A	281	295	Right-handed alpha
Helix 15	AB6	A	306	317	Right-handed alpha
Helix 16	AB7	A	318	321	Right-handed 310
Helix 17	AB8	A	326	328	Right-handed 310
Helix 18	AB9	A	329	334	Right-handed alpha
Helix 19	AC1	A	355	366	Right-handed alpha
Helix 20	AC2	A	366	373	Right-handed alpha
Helix 21	AC3	A	374	392	Right-handed alpha
Helix 22	AC4	A	411	416	Right-handed alpha
Helix 23	AC5	A	417	425	Right-handed alpha
Helix 24	AC6	A	431	445	Right-handed alpha
Helix 25	AC7	A	447	461	Right-handed alpha
Helix 26	AC8	A	468	491	Right-handed alpha
Helix 27	AC9	A	508	520	Right-handed alpha
Helix 28	AD1	A	526	531	Right-handed alpha
Helix 29	AD2	A	532	539	Right-handed alpha
Helix 30	AD3	A	540	546	Right-handed 310
Helix 31	AD4	A	552	571	Right-handed alpha
Helix 32	AD5	A	579	597	Right-handed alpha
Helix 33	AD6	A	600	604	Right-handed 310
Helix 34	AD7	A	605	628	Right-handed alpha
Helix 35	AD8	A	648	659	Right-handed alpha
Helix 36	AD9	A	660	671	Right-handed alpha
Helix 37	AE1	A	680	700	Right-handed alpha
Helix 38	AE2	A	709	723	Right-handed alpha
Helix 39	AE3	A	724	726	Right-handed 310
Helix 40	AE4	A	729	743	Right-handed alpha
Helix 41	AE5	A	750	765	Right-handed alpha
Helix 42	AE6	A	768	786	Right-handed alpha
Helix 43	AE7	A	787	789	Right-handed 310
Helix 44	AE8	A	800	812	Right-handed alpha
Helix 45	AE9	A	817	826	Right-handed alpha
Helix 46	AF1	A	831	840	Right-handed alpha
Helix 47	AF2	A	841	845	Right-handed 310
Helix 48	AF3	A	846	857	Right-handed alpha
Helix 49	AF4	A	861	871	Right-handed alpha
Helix 50	AF5	A	878	899	Right-handed alpha
Helix 51	AF6	A	912	922	Right-handed alpha
Helix 52	AF7	A	928	933	Right-handed 310
Helix 53	AF8	A	937	945	Right-handed alpha
Helix 54	AF9	A	950	955	Right-handed 310
Helix 55	AG1	A	956	962	Right-handed alpha
Helix 56	AG2	A	963	971	Right-handed alpha
Helix 57	AG3	A	975	991	Right-handed alpha
Helix 58	AG4	A	993	1002	Right-handed alpha
Helix 59	AG5	B	181	185	Right-handed 310
Helix 60	AG6	C	69	75	Right-handed alpha
Helix 61	AG7	D	23	40	Right-handed alpha
Helix 62	AG8	D	48	54	Right-handed alpha
Helix 63	AG9	D	58	72	Right-handed alpha
Helix 64	AH1	D	80	95	Right-handed alpha
Helix 65	AH2	D	95	109	Right-handed alpha
Helix 66	AH3	D	115	122	Right-handed alpha
Helix 67	AH4	D	136	146	Right-handed alpha
Helix 68	AH5	D	154	160	Right-handed alpha
Helix 69	AH6	D	173	177	Right-handed 310
Helix 70	AH7	D	186	192	Right-handed alpha
Helix 71	AH8	D	192	197	Right-handed alpha
Helix 72	AH9	D	197	211	Right-handed alpha
Helix 73	AI1	D	222	235	Right-handed alpha
Helix 74	AI2	D	254	265	Right-handed alpha
Helix 75	AI3	D	271	275	Right-handed alpha
Helix 76	AI4	D	281	296	Right-handed alpha
Helix 77	AI5	D	298	302	Right-handed 310
Helix 78	AI6	D	305	317	Right-handed alpha
Helix 79	AI7	D	318	322	Right-handed 310
Helix 80	AI8	D	327	332	Right-handed 310
Helix 81	AI9	D	355	366	Right-handed alpha
Helix 82	AJ1	D	366	372	Right-handed alpha
Helix 83	AJ2	D	374	391	Right-handed alpha
Helix 84	AJ3	D	417	426	Right-handed alpha
Helix 85	AJ4	D	431	446	Right-handed alpha
Helix 86	AJ5	D	447	461	Right-handed alpha
Helix 87	AJ6	D	467	494	Right-handed alpha
Helix 88	AJ7	D	495	501	Right-handed alpha
Helix 89	AJ8	D	508	519	Right-handed alpha
Helix 90	AJ9	D	532	539	Right-handed alpha
Helix 91	AK1	D	540	546	Right-handed 310
Helix 92	AK2	D	552	572	Right-handed alpha
Helix 93	AK3	D	579	597	Right-handed alpha
Helix 94	AK4	D	600	604	Right-handed 310
Helix 95	AK5	D	605	628	Right-handed alpha
Helix 96	AK6	D	648	658	Right-handed alpha
Helix 97	AK7	D	660	671	Right-handed alpha
Helix 98	AK8	D	681	701	Right-handed alpha
Helix 99	AK9	D	705	722	Right-handed alpha
Helix 100	AL1	D	723	726	Right-handed 310
Helix 101	AL2	D	729	743	Right-handed alpha
Helix 102	AL3	D	750	765	Right-handed alpha
Helix 103	AL4	D	768	785	Right-handed alpha
Helix 104	AL5	D	786	788	Right-handed 310
Helix 105	AL6	D	800	812	Right-handed alpha
Helix 106	AL7	D	817	823	Right-handed alpha
Helix 107	AL8	D	831	840	Right-handed alpha
Helix 108	AL9	D	841	845	Right-handed 310
Helix 109	AM1	D	846	855	Right-handed alpha
Helix 110	AM2	D	862	872	Right-handed alpha
Helix 111	AM3	D	878	902	Right-handed alpha
Helix 112	AM4	D	911	922	Right-handed alpha
Helix 113	AM5	D	928	933	Right-handed alpha
Helix 114	AM6	D	937	945	Right-handed alpha
Helix 115	AM7	D	950	954	Right-handed 310
Helix 116	AM8	D	955	962	Right-handed 310
Helix 117	AM9	D	964	970	Right-handed alpha
Helix 118	AN1	D	976	991	Right-handed alpha
Helix 119	AN2	D	993	1003	Right-handed alpha
Helix 120	AN3	E	44	48	Right-handed 310
Helix 121	AN4	E	70	74	Right-handed 310
Helix 122	AN5	F	23	40	Right-handed alpha
Helix 123	AN6	F	47	54	Right-handed alpha
Helix 124	AN7	F	58	71	Right-handed alpha
Helix 125	AN8	F	80	95	Right-handed alpha
Helix 126	AN9	F	96	109	Right-handed alpha
Helix 127	AO1	F	115	122	Right-handed alpha
Helix 128	AO2	F	136	146	Right-handed alpha
Helix 129	AO3	F	154	160	Right-handed alpha
Helix 130	AO4	F	179	183	Right-handed 310
Helix 131	AO5	F	186	192	Right-handed alpha
Helix 132	AO6	F	192	197	Right-handed alpha
Helix 133	AO7	F	197	211	Right-handed alpha
Helix 134	AO8	F	223	233	Right-handed alpha
Helix 135	AO9	F	254	265	Right-handed alpha
Helix 136	AP1	F	271	275	Right-handed alpha
Helix 137	AP2	F	281	296	Right-handed alpha
Helix 138	AP3	F	297	302	Right-handed alpha
Helix 139	AP4	F	304	317	Right-handed alpha
Helix 140	AP5	F	318	322	Right-handed 310
Helix 141	AP6	F	329	334	Right-handed alpha
Helix 142	AP7	F	355	366	Right-handed alpha
Helix 143	AP8	F	366	373	Right-handed alpha
Helix 144	AP9	F	374	391	Right-handed alpha
Helix 145	AQ1	F	412	416	Right-handed 310
Helix 146	AQ2	F	417	427	Right-handed alpha
Helix 147	AQ3	F	431	446	Right-handed alpha
Helix 148	AQ4	F	448	462	Right-handed alpha
Helix 149	AQ5	F	468	493	Right-handed alpha
Helix 150	AQ6	F	495	501	Right-handed alpha
Helix 151	AQ7	F	508	519	Right-handed alpha
Helix 152	AQ8	F	523	525	Right-handed 310
Helix 153	AQ9	F	526	531	Right-handed alpha
Helix 154	AR1	F	532	539	Right-handed alpha
Helix 155	AR2	F	542	547	Right-handed alpha
Helix 156	AR3	F	552	572	Right-handed alpha
Helix 157	AR4	F	579	597	Right-handed alpha
Helix 158	AR5	F	600	604	Right-handed 310
Helix 159	AR6	F	605	629	Right-handed alpha
Helix 160	AR7	F	648	657	Right-handed alpha
Helix 161	AR8	F	660	671	Right-handed alpha
Helix 162	AR9	F	672	676	Right-handed 310
Helix 163	AS1	F	680	701	Right-handed alpha
Helix 164	AS2	F	705	722	Right-handed alpha
Helix 165	AS3	F	729	743	Right-handed alpha
Helix 166	AS4	F	751	762	Right-handed alpha
Helix 167	AS5	F	768	786	Right-handed alpha
Helix 168	AS6	F	800	812	Right-handed alpha
Helix 169	AS7	F	817	827	Right-handed alpha
Helix 170	AS8	F	832	840	Right-handed alpha
Helix 171	AS9	F	846	853	Right-handed 310
Helix 172	AT1	F	861	872	Right-handed alpha
Helix 173	AT2	F	878	902	Right-handed alpha
Helix 174	AT3	F	911	922	Right-handed alpha
Helix 175	AT4	F	928	933	Right-handed alpha
Helix 176	AT5	F	937	945	Right-handed alpha
Helix 177	AT6	F	957	962	Right-handed alpha
Helix 178	AT7	F	963	973	Right-handed alpha
Helix 179	AT8	F	974	976	Right-handed 310
Helix 180	AT9	F	977	990	Right-handed alpha
Helix 181	AU1	F	993	1003	Right-handed alpha
Helix 182	AU2	G	69	74	Right-handed alpha
Helix 183	AU3	H	25	38	Right-handed alpha
Helix 184	AU4	H	48	54	Right-handed alpha
Helix 185	AU5	H	58	71	Right-handed alpha
Helix 186	AU6	H	80	108	Right-handed alpha
Helix 187	AU7	H	115	124	Right-handed alpha
Helix 188	AU8	H	136	146	Right-handed alpha
Helix 189	AU9	H	154	160	Right-handed alpha
Helix 190	AV1	H	186	192	Right-handed alpha
Helix 191	AV2	H	192	197	Right-handed alpha
Helix 192	AV3	H	197	211	Right-handed alpha
Helix 193	AV4	H	222	236	Right-handed alpha
Helix 194	AV5	H	254	265	Right-handed alpha
Helix 195	AV6	H	270	275	Right-handed alpha
Helix 196	AV7	H	284	296	Right-handed alpha
Helix 197	AV8	H	297	302	Right-handed alpha
Helix 198	AV9	H	305	317	Right-handed alpha
Helix 199	AW1	H	318	321	Right-handed 310
Helix 200	AW2	H	326	332	Right-handed 310
Helix 201	AW3	H	356	366	Right-handed alpha
Helix 202	AW4	H	366	373	Right-handed alpha
Helix 203	AW5	H	374	392	Right-handed alpha
Helix 204	AW6	H	396	400	Right-handed 310
Helix 205	AW7	H	417	426	Right-handed alpha
Helix 206	AW8	H	431	445	Right-handed alpha
Helix 207	AW9	H	447	461	Right-handed alpha
Helix 208	AX1	H	467	494	Right-handed alpha
Helix 209	AX2	H	495	501	Right-handed alpha
Helix 210	AX3	H	508	519	Right-handed alpha
Helix 211	AX4	H	526	531	Right-handed alpha
Helix 212	AX5	H	532	539	Right-handed alpha
Helix 213	AX6	H	542	547	Right-handed alpha
Helix 214	AX7	H	550	572	Right-handed alpha
Helix 215	AX8	H	579	597	Right-handed alpha
Helix 216	AX9	H	598	604	Right-handed 310
Helix 217	AY1	H	605	628	Right-handed alpha
Helix 218	AY2	H	648	659	Right-handed alpha
Helix 219	AY3	H	660	671	Right-handed alpha
Helix 220	AY4	H	682	701	Right-handed alpha
Helix 221	AY5	H	705	722	Right-handed alpha
Helix 222	AY6	H	723	725	Right-handed 310
Helix 223	AY7	H	729	741	Right-handed alpha
Helix 224	AY8	H	750	761	Right-handed alpha
Helix 225	AY9	H	768	785	Right-handed alpha
Helix 226	AZ1	H	786	788	Right-handed 310
Helix 227	AZ2	H	801	812	Right-handed alpha
Helix 228	AZ3	H	817	824	Right-handed alpha
Helix 229	AZ4	H	832	840	Right-handed alpha
Helix 230	AZ5	H	841	845	Right-handed 310
Helix 231	AZ6	H	846	856	Right-handed alpha
Helix 232	AZ7	H	862	872	Right-handed alpha
Helix 233	AZ8	H	878	903	Right-handed alpha
Helix 234	AZ9	H	912	922	Right-handed alpha
Helix 235	BA1	H	929	933	Right-handed 310
Helix 236	BA2	H	937	945	Right-handed alpha
Helix 237	BA3	H	955	962	Right-handed 310
Helix 238	BA4	H	963	971	Right-handed alpha
Helix 239	BA5	H	976	990	Right-handed alpha
Helix 240	BA6	H	994	1003	Right-handed alpha

There are 17 sheets in PDB entry 8WKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	130	131	parallel
Strand 4	A	42	46	parallel
Strand 5	A	212	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	346	348	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	21	25	anti-parallel
Strand 3	B	10	15	anti-parallel
Strand 4	B	173	178	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	27	31	anti-parallel
Strand 3	D	574	575	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	220	222	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	C	10	13	anti-parallel
Strand 3	C	23	33	anti-parallel
Strand 4	C	58	63	anti-parallel
Strand 5	C	219	222	anti-parallel
Strand 6	C	198	200	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	D	794	795	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	169	parallel
Strand 3	D	128	131	parallel
Strand 4	D	42	46	parallel
Strand 5	D	212	216	parallel
Strand 6	D	244	247	parallel
Strand 7	D	267	270	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	340	first strand
Strand 2	D	346	348	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	25	first strand
Strand 2	E	10	14	anti-parallel
Strand 3	E	174	178	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	199	first strand
Strand 2	E	219	222	anti-parallel
Strand 3	E	59	63	anti-parallel
Strand 4	E	27	31	anti-parallel
Strand 5	H	574	575	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	152	first strand
Strand 2	F	166	169	parallel
Strand 3	F	128	131	parallel
Strand 4	F	42	46	parallel
Strand 5	F	212	216	parallel
Strand 6	F	244	247	parallel
Strand 7	F	267	270	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	340	first strand
Strand 2	F	346	348	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	15	first strand
Strand 2	G	173	174	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	30	first strand
Strand 2	G	61	63	anti-parallel
Strand 3	G	219	222	anti-parallel
Strand 4	G	198	199	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	152	first strand
Strand 2	H	166	169	parallel
Strand 3	H	128	131	parallel
Strand 4	H	43	46	parallel
Strand 5	H	213	216	parallel
Strand 6	H	244	246	parallel
Strand 7	H	267	269	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	338	340	first strand
Strand 2	H	346	348	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WKS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKS