Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WKS entry

There are 8 chains in PDB entry 8WKS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 22ILE 1005
B
ALA 9VAL 234
C
ALA 9VAL 234
D
LEU 22ILE 1005
E
ALA 9VAL 234
F
LEU 22ILE 1005
G
ALA 9VAL 234
H
LEU 22ILE 1005
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are240 helices in PDB entry 8WKS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
23 40Right-handed alpha
Helix 2
AA2
A
47 53Right-handed alpha
Helix 3
AA3
A
58 72Right-handed alpha
Helix 4
AA4
A
80 95Right-handed alpha
Helix 5
AA5
A
96 109Right-handed alpha
Helix 6
AA6
A
115 122Right-handed alpha
Helix 7
AA7
A
123 125Right-handed 310
Helix 8
AA8
A
136 145Right-handed alpha
Helix 9
AA9
A
186 192Right-handed alpha
Helix 10
AB1
A
192 197Right-handed alpha
Helix 11
AB2
A
197 211Right-handed alpha
Helix 12
AB3
A
222 235Right-handed alpha
Helix 13
AB4
A
254 264Right-handed alpha
Helix 14
AB5
A
281 295Right-handed alpha
Helix 15
AB6
A
306 317Right-handed alpha
Helix 16
AB7
A
318 321Right-handed 310
Helix 17
AB8
A
326 328Right-handed 310
Helix 18
AB9
A
329 334Right-handed alpha
Helix 19
AC1
A
355 366Right-handed alpha
Helix 20
AC2
A
366 373Right-handed alpha
Helix 21
AC3
A
374 392Right-handed alpha
Helix 22
AC4
A
411 416Right-handed alpha
Helix 23
AC5
A
417 425Right-handed alpha
Helix 24
AC6
A
431 445Right-handed alpha
Helix 25
AC7
A
447 461Right-handed alpha
Helix 26
AC8
A
468 491Right-handed alpha
Helix 27
AC9
A
508 520Right-handed alpha
Helix 28
AD1
A
526 531Right-handed alpha
Helix 29
AD2
A
532 539Right-handed alpha
Helix 30
AD3
A
540 546Right-handed 310
Helix 31
AD4
A
552 571Right-handed alpha
Helix 32
AD5
A
579 597Right-handed alpha
Helix 33
AD6
A
600 604Right-handed 310
Helix 34
AD7
A
605 628Right-handed alpha
Helix 35
AD8
A
648 659Right-handed alpha
Helix 36
AD9
A
660 671Right-handed alpha
Helix 37
AE1
A
680 700Right-handed alpha
Helix 38
AE2
A
709 723Right-handed alpha
Helix 39
AE3
A
724 726Right-handed 310
Helix 40
AE4
A
729 743Right-handed alpha
Helix 41
AE5
A
750 765Right-handed alpha
Helix 42
AE6
A
768 786Right-handed alpha
Helix 43
AE7
A
787 789Right-handed 310
Helix 44
AE8
A
800 812Right-handed alpha
Helix 45
AE9
A
817 826Right-handed alpha
Helix 46
AF1
A
831 840Right-handed alpha
Helix 47
AF2
A
841 845Right-handed 310
Helix 48
AF3
A
846 857Right-handed alpha
Helix 49
AF4
A
861 871Right-handed alpha
Helix 50
AF5
A
878 899Right-handed alpha
Helix 51
AF6
A
912 922Right-handed alpha
Helix 52
AF7
A
928 933Right-handed 310
Helix 53
AF8
A
937 945Right-handed alpha
Helix 54
AF9
A
950 955Right-handed 310
Helix 55
AG1
A
956 962Right-handed alpha
Helix 56
AG2
A
963 971Right-handed alpha
Helix 57
AG3
A
975 991Right-handed alpha
Helix 58
AG4
A
993 1002Right-handed alpha
Helix 59
AG5
B
181 185Right-handed 310
Helix 60
AG6
C
69 75Right-handed alpha
Helix 61
AG7
D
23 40Right-handed alpha
Helix 62
AG8
D
48 54Right-handed alpha
Helix 63
AG9
D
58 72Right-handed alpha
Helix 64
AH1
D
80 95Right-handed alpha
Helix 65
AH2
D
95 109Right-handed alpha
Helix 66
AH3
D
115 122Right-handed alpha
Helix 67
AH4
D
136 146Right-handed alpha
Helix 68
AH5
D
154 160Right-handed alpha
Helix 69
AH6
D
173 177Right-handed 310
Helix 70
AH7
D
186 192Right-handed alpha
Helix 71
AH8
D
192 197Right-handed alpha
Helix 72
AH9
D
197 211Right-handed alpha
Helix 73
AI1
D
222 235Right-handed alpha
Helix 74
AI2
D
254 265Right-handed alpha
Helix 75
AI3
D
271 275Right-handed alpha
Helix 76
AI4
D
281 296Right-handed alpha
Helix 77
AI5
D
298 302Right-handed 310
Helix 78
AI6
D
305 317Right-handed alpha
Helix 79
AI7
D
318 322Right-handed 310
Helix 80
AI8
D
327 332Right-handed 310
Helix 81
AI9
D
355 366Right-handed alpha
Helix 82
AJ1
D
366 372Right-handed alpha
Helix 83
AJ2
D
374 391Right-handed alpha
Helix 84
AJ3
D
417 426Right-handed alpha
Helix 85
AJ4
D
431 446Right-handed alpha
Helix 86
AJ5
D
447 461Right-handed alpha
Helix 87
AJ6
D
467 494Right-handed alpha
Helix 88
AJ7
D
495 501Right-handed alpha
Helix 89
AJ8
D
508 519Right-handed alpha
Helix 90
AJ9
D
532 539Right-handed alpha
Helix 91
AK1
D
540 546Right-handed 310
Helix 92
AK2
D
552 572Right-handed alpha
Helix 93
AK3
D
579 597Right-handed alpha
Helix 94
AK4
D
600 604Right-handed 310
Helix 95
AK5
D
605 628Right-handed alpha
Helix 96
AK6
D
648 658Right-handed alpha
Helix 97
AK7
D
660 671Right-handed alpha
Helix 98
AK8
D
681 701Right-handed alpha
Helix 99
AK9
D
705 722Right-handed alpha
Helix 100
AL1
D
723 726Right-handed 310
Helix 101
AL2
D
729 743Right-handed alpha
Helix 102
AL3
D
750 765Right-handed alpha
Helix 103
AL4
D
768 785Right-handed alpha
Helix 104
AL5
D
786 788Right-handed 310
Helix 105
AL6
D
800 812Right-handed alpha
Helix 106
AL7
D
817 823Right-handed alpha
Helix 107
AL8
D
831 840Right-handed alpha
Helix 108
AL9
D
841 845Right-handed 310
Helix 109
AM1
D
846 855Right-handed alpha
Helix 110
AM2
D
862 872Right-handed alpha
Helix 111
AM3
D
878 902Right-handed alpha
Helix 112
AM4
D
911 922Right-handed alpha
Helix 113
AM5
D
928 933Right-handed alpha
Helix 114
AM6
D
937 945Right-handed alpha
Helix 115
AM7
D
950 954Right-handed 310
Helix 116
AM8
D
955 962Right-handed 310
Helix 117
AM9
D
964 970Right-handed alpha
Helix 118
AN1
D
976 991Right-handed alpha
Helix 119
AN2
D
993 1003Right-handed alpha
Helix 120
AN3
E
44 48Right-handed 310
Helix 121
AN4
E
70 74Right-handed 310
Helix 122
AN5
F
23 40Right-handed alpha
Helix 123
AN6
F
47 54Right-handed alpha
Helix 124
AN7
F
58 71Right-handed alpha
Helix 125
AN8
F
80 95Right-handed alpha
Helix 126
AN9
F
96 109Right-handed alpha
Helix 127
AO1
F
115 122Right-handed alpha
Helix 128
AO2
F
136 146Right-handed alpha
Helix 129
AO3
F
154 160Right-handed alpha
Helix 130
AO4
F
179 183Right-handed 310
Helix 131
AO5
F
186 192Right-handed alpha
Helix 132
AO6
F
192 197Right-handed alpha
Helix 133
AO7
F
197 211Right-handed alpha
Helix 134
AO8
F
223 233Right-handed alpha
Helix 135
AO9
F
254 265Right-handed alpha
Helix 136
AP1
F
271 275Right-handed alpha
Helix 137
AP2
F
281 296Right-handed alpha
Helix 138
AP3
F
297 302Right-handed alpha
Helix 139
AP4
F
304 317Right-handed alpha
Helix 140
AP5
F
318 322Right-handed 310
Helix 141
AP6
F
329 334Right-handed alpha
Helix 142
AP7
F
355 366Right-handed alpha
Helix 143
AP8
F
366 373Right-handed alpha
Helix 144
AP9
F
374 391Right-handed alpha
Helix 145
AQ1
F
412 416Right-handed 310
Helix 146
AQ2
F
417 427Right-handed alpha
Helix 147
AQ3
F
431 446Right-handed alpha
Helix 148
AQ4
F
448 462Right-handed alpha
Helix 149
AQ5
F
468 493Right-handed alpha
Helix 150
AQ6
F
495 501Right-handed alpha
Helix 151
AQ7
F
508 519Right-handed alpha
Helix 152
AQ8
F
523 525Right-handed 310
Helix 153
AQ9
F
526 531Right-handed alpha
Helix 154
AR1
F
532 539Right-handed alpha
Helix 155
AR2
F
542 547Right-handed alpha
Helix 156
AR3
F
552 572Right-handed alpha
Helix 157
AR4
F
579 597Right-handed alpha
Helix 158
AR5
F
600 604Right-handed 310
Helix 159
AR6
F
605 629Right-handed alpha
Helix 160
AR7
F
648 657Right-handed alpha
Helix 161
AR8
F
660 671Right-handed alpha
Helix 162
AR9
F
672 676Right-handed 310
Helix 163
AS1
F
680 701Right-handed alpha
Helix 164
AS2
F
705 722Right-handed alpha
Helix 165
AS3
F
729 743Right-handed alpha
Helix 166
AS4
F
751 762Right-handed alpha
Helix 167
AS5
F
768 786Right-handed alpha
Helix 168
AS6
F
800 812Right-handed alpha
Helix 169
AS7
F
817 827Right-handed alpha
Helix 170
AS8
F
832 840Right-handed alpha
Helix 171
AS9
F
846 853Right-handed 310
Helix 172
AT1
F
861 872Right-handed alpha
Helix 173
AT2
F
878 902Right-handed alpha
Helix 174
AT3
F
911 922Right-handed alpha
Helix 175
AT4
F
928 933Right-handed alpha
Helix 176
AT5
F
937 945Right-handed alpha
Helix 177
AT6
F
957 962Right-handed alpha
Helix 178
AT7
F
963 973Right-handed alpha
Helix 179
AT8
F
974 976Right-handed 310
Helix 180
AT9
F
977 990Right-handed alpha
Helix 181
AU1
F
993 1003Right-handed alpha
Helix 182
AU2
G
69 74Right-handed alpha
Helix 183
AU3
H
25 38Right-handed alpha
Helix 184
AU4
H
48 54Right-handed alpha
Helix 185
AU5
H
58 71Right-handed alpha
Helix 186
AU6
H
80 108Right-handed alpha
Helix 187
AU7
H
115 124Right-handed alpha
Helix 188
AU8
H
136 146Right-handed alpha
Helix 189
AU9
H
154 160Right-handed alpha
Helix 190
AV1
H
186 192Right-handed alpha
Helix 191
AV2
H
192 197Right-handed alpha
Helix 192
AV3
H
197 211Right-handed alpha
Helix 193
AV4
H
222 236Right-handed alpha
Helix 194
AV5
H
254 265Right-handed alpha
Helix 195
AV6
H
270 275Right-handed alpha
Helix 196
AV7
H
284 296Right-handed alpha
Helix 197
AV8
H
297 302Right-handed alpha
Helix 198
AV9
H
305 317Right-handed alpha
Helix 199
AW1
H
318 321Right-handed 310
Helix 200
AW2
H
326 332Right-handed 310
Helix 201
AW3
H
356 366Right-handed alpha
Helix 202
AW4
H
366 373Right-handed alpha
Helix 203
AW5
H
374 392Right-handed alpha
Helix 204
AW6
H
396 400Right-handed 310
Helix 205
AW7
H
417 426Right-handed alpha
Helix 206
AW8
H
431 445Right-handed alpha
Helix 207
AW9
H
447 461Right-handed alpha
Helix 208
AX1
H
467 494Right-handed alpha
Helix 209
AX2
H
495 501Right-handed alpha
Helix 210
AX3
H
508 519Right-handed alpha
Helix 211
AX4
H
526 531Right-handed alpha
Helix 212
AX5
H
532 539Right-handed alpha
Helix 213
AX6
H
542 547Right-handed alpha
Helix 214
AX7
H
550 572Right-handed alpha
Helix 215
AX8
H
579 597Right-handed alpha
Helix 216
AX9
H
598 604Right-handed 310
Helix 217
AY1
H
605 628Right-handed alpha
Helix 218
AY2
H
648 659Right-handed alpha
Helix 219
AY3
H
660 671Right-handed alpha
Helix 220
AY4
H
682 701Right-handed alpha
Helix 221
AY5
H
705 722Right-handed alpha
Helix 222
AY6
H
723 725Right-handed 310
Helix 223
AY7
H
729 741Right-handed alpha
Helix 224
AY8
H
750 761Right-handed alpha
Helix 225
AY9
H
768 785Right-handed alpha
Helix 226
AZ1
H
786 788Right-handed 310
Helix 227
AZ2
H
801 812Right-handed alpha
Helix 228
AZ3
H
817 824Right-handed alpha
Helix 229
AZ4
H
832 840Right-handed alpha
Helix 230
AZ5
H
841 845Right-handed 310
Helix 231
AZ6
H
846 856Right-handed alpha
Helix 232
AZ7
H
862 872Right-handed alpha
Helix 233
AZ8
H
878 903Right-handed alpha
Helix 234
AZ9
H
912 922Right-handed alpha
Helix 235
BA1
H
929 933Right-handed 310
Helix 236
BA2
H
937 945Right-handed alpha
Helix 237
BA3
H
955 962Right-handed 310
Helix 238
BA4
H
963 971Right-handed alpha
Helix 239
BA5
H
976 990Right-handed alpha
Helix 240
BA6
H
994 1003Right-handed alpha
Back to top of page

There are 17 sheets in PDB entry 8WKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
150 152first strand
Strand 2
A
166 169parallel
Strand 3
A
130 131parallel
Strand 4
A
42 46parallel
Strand 5
A
212 216parallel
Strand 6
A
244 247parallel
Strand 7
A
267 270parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
338 340first strand
Strand 2
A
346 348anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
67 68first strand
Strand 2
B
21 25anti-parallel
Strand 3
B
10 15anti-parallel
Strand 4
B
173 178anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
60 63first strand
Strand 2
B
27 31anti-parallel
Strand 3
D
574 575anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
198 200first strand
Strand 2
B
220 222anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
176 177first strand
Strand 2
C
10 13anti-parallel
Strand 3
C
23 33anti-parallel
Strand 4
C
58 63anti-parallel
Strand 5
C
219 222anti-parallel
Strand 6
C
198 200anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
224 225first strand
Strand 2
D
794 795anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
150 152first strand
Strand 2
D
166 169parallel
Strand 3
D
128 131parallel
Strand 4
D
42 46parallel
Strand 5
D
212 216parallel
Strand 6
D
244 247parallel
Strand 7
D
267 270parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
338 340first strand
Strand 2
D
346 348anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
21 25first strand
Strand 2
E
10 14anti-parallel
Strand 3
E
174 178anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
198 199first strand
Strand 2
E
219 222anti-parallel
Strand 3
E
59 63anti-parallel
Strand 4
E
27 31anti-parallel
Strand 5
H
574 575anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
150 152first strand
Strand 2
F
166 169parallel
Strand 3
F
128 131parallel
Strand 4
F
42 46parallel
Strand 5
F
212 216parallel
Strand 6
F
244 247parallel
Strand 7
F
267 270parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
338 340first strand
Strand 2
F
346 348anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
14 15first strand
Strand 2
G
173 174anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
27 30first strand
Strand 2
G
61 63anti-parallel
Strand 3
G
219 222anti-parallel
Strand 4
G
198 199anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
150 152first strand
Strand 2
H
166 169parallel
Strand 3
H
128 131parallel
Strand 4
H
43 46parallel
Strand 5
H
213 216parallel
Strand 6
H
244 246parallel
Strand 7
H
267 269parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
338 340first strand
Strand 2
H
346 348anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il