Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WKT entry

There are 5 chains in PDB entry 8WKT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 14	ILE 1005
B	GLU 7	ILE 1005
C	THR 11	ASP 120
D	GLY 12	SER 296
E	GLU 13	GLN 297

There are148 helices in PDB entry 8WKT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	21	Right-handed alpha
Helix 2	AA2	A	23	39	Right-handed alpha
Helix 3	AA3	A	50	54	Right-handed 310
Helix 4	AA4	A	58	72	Right-handed alpha
Helix 5	AA5	A	82	96	Right-handed alpha
Helix 6	AA6	A	96	108	Right-handed alpha
Helix 7	AA7	A	115	123	Right-handed alpha
Helix 8	AA8	A	136	146	Right-handed alpha
Helix 9	AA9	A	154	160	Right-handed alpha
Helix 10	AB1	A	187	192	Right-handed alpha
Helix 11	AB2	A	197	211	Right-handed alpha
Helix 12	AB3	A	222	233	Right-handed alpha
Helix 13	AB4	A	256	265	Right-handed alpha
Helix 14	AB5	A	271	275	Right-handed alpha
Helix 15	AB6	A	281	296	Right-handed alpha
Helix 16	AB7	A	304	322	Right-handed alpha
Helix 17	AB8	A	329	334	Right-handed alpha
Helix 18	AB9	A	355	365	Right-handed alpha
Helix 19	AC1	A	367	371	Right-handed 310
Helix 20	AC2	A	376	391	Right-handed alpha
Helix 21	AC3	A	417	427	Right-handed alpha
Helix 22	AC4	A	431	446	Right-handed alpha
Helix 23	AC5	A	447	462	Right-handed alpha
Helix 24	AC6	A	468	494	Right-handed alpha
Helix 25	AC7	A	494	500	Right-handed alpha
Helix 26	AC8	A	508	520	Right-handed alpha
Helix 27	AC9	A	523	527	Right-handed 310
Helix 28	AD1	A	532	539	Right-handed alpha
Helix 29	AD2	A	540	547	Right-handed 310
Helix 30	AD3	A	548	572	Right-handed alpha
Helix 31	AD4	A	579	583	Right-handed 310
Helix 32	AD5	A	584	598	Right-handed alpha
Helix 33	AD6	A	605	628	Right-handed alpha
Helix 34	AD7	A	648	658	Right-handed alpha
Helix 35	AD8	A	660	669	Right-handed alpha
Helix 36	AD9	A	670	671	Right-handed 310
Helix 37	AE1	A	672	676	Right-handed 310
Helix 38	AE2	A	680	699	Right-handed alpha
Helix 39	AE3	A	711	722	Right-handed alpha
Helix 40	AE4	A	729	742	Right-handed alpha
Helix 41	AE5	A	750	762	Right-handed alpha
Helix 42	AE6	A	768	786	Right-handed alpha
Helix 43	AE7	A	800	812	Right-handed alpha
Helix 44	AE8	A	818	825	Right-handed alpha
Helix 45	AE9	A	832	841	Right-handed alpha
Helix 46	AF1	A	846	855	Right-handed alpha
Helix 47	AF2	A	861	870	Right-handed alpha
Helix 48	AF3	A	878	903	Right-handed alpha
Helix 49	AF4	A	912	921	Right-handed alpha
Helix 50	AF5	A	927	934	Right-handed 310
Helix 51	AF6	A	937	945	Right-handed alpha
Helix 52	AF7	A	957	962	Right-handed 310
Helix 53	AF8	A	966	972	Right-handed alpha
Helix 54	AF9	A	973	990	Right-handed alpha
Helix 55	AG1	A	994	1003	Right-handed alpha
Helix 56	AG2	B	8	20	Right-handed alpha
Helix 57	AG3	B	23	38	Right-handed alpha
Helix 58	AG4	B	47	53	Right-handed alpha
Helix 59	AG5	B	58	72	Right-handed alpha
Helix 60	AG6	B	82	93	Right-handed alpha
Helix 61	AG7	B	97	109	Right-handed alpha
Helix 62	AG8	B	115	123	Right-handed alpha
Helix 63	AG9	B	139	144	Right-handed alpha
Helix 64	AH1	B	154	158	Right-handed 310
Helix 65	AH2	B	186	192	Right-handed alpha
Helix 66	AH3	B	192	197	Right-handed alpha
Helix 67	AH4	B	197	210	Right-handed alpha
Helix 68	AH5	B	222	236	Right-handed alpha
Helix 69	AH6	B	254	264	Right-handed alpha
Helix 70	AH7	B	271	275	Right-handed alpha
Helix 71	AH8	B	281	298	Right-handed alpha
Helix 72	AH9	B	304	317	Right-handed alpha
Helix 73	AI1	B	318	322	Right-handed 310
Helix 74	AI2	B	329	334	Right-handed alpha
Helix 75	AI3	B	355	366	Right-handed alpha
Helix 76	AI4	B	366	372	Right-handed alpha
Helix 77	AI5	B	374	392	Right-handed alpha
Helix 78	AI6	B	396	400	Right-handed 310
Helix 79	AI7	B	417	427	Right-handed alpha
Helix 80	AI8	B	431	445	Right-handed alpha
Helix 81	AI9	B	447	462	Right-handed alpha
Helix 82	AJ1	B	468	490	Right-handed alpha
Helix 83	AJ2	B	495	500	Right-handed 310
Helix 84	AJ3	B	508	519	Right-handed alpha
Helix 85	AJ4	B	526	531	Right-handed alpha
Helix 86	AJ5	B	532	539	Right-handed alpha
Helix 87	AJ6	B	540	543	Right-handed 310
Helix 88	AJ7	B	555	561	Right-handed 310
Helix 89	AJ8	B	581	596	Right-handed alpha
Helix 90	AJ9	B	605	627	Right-handed alpha
Helix 91	AK1	B	629	635	Right-handed alpha
Helix 92	AK2	B	648	659	Right-handed alpha
Helix 93	AK3	B	660	671	Right-handed alpha
Helix 94	AK4	B	672	676	Right-handed 310
Helix 95	AK5	B	680	701	Right-handed alpha
Helix 96	AK6	B	705	723	Right-handed alpha
Helix 97	AK7	B	724	726	Right-handed 310
Helix 98	AK8	B	729	743	Right-handed alpha
Helix 99	AK9	B	750	762	Right-handed alpha
Helix 100	AL1	B	768	786	Right-handed alpha
Helix 101	AL2	B	800	812	Right-handed alpha
Helix 102	AL3	B	817	826	Right-handed alpha
Helix 103	AL4	B	831	841	Right-handed alpha
Helix 104	AL5	B	842	845	Right-handed 310
Helix 105	AL6	B	846	855	Right-handed alpha
Helix 106	AL7	B	862	871	Right-handed alpha
Helix 107	AL8	B	878	897	Right-handed alpha
Helix 108	AL9	B	912	922	Right-handed alpha
Helix 109	AM1	B	928	933	Right-handed 310
Helix 110	AM2	B	937	945	Right-handed alpha
Helix 111	AM3	B	950	954	Right-handed 310
Helix 112	AM4	B	955	962	Right-handed 310
Helix 113	AM5	B	963	973	Right-handed alpha
Helix 114	AM6	B	973	990	Right-handed alpha
Helix 115	AM7	B	993	1004	Right-handed alpha
Helix 116	AM8	C	95	101	Right-handed alpha
Helix 117	AM9	D	14	22	Right-handed alpha
Helix 118	AN1	D	23	39	Right-handed alpha
Helix 119	AN2	D	51	55	Right-handed 310
Helix 120	AN3	D	58	72	Right-handed alpha
Helix 121	AN4	D	82	95	Right-handed alpha
Helix 122	AN5	D	97	108	Right-handed alpha
Helix 123	AN6	D	115	124	Right-handed alpha
Helix 124	AN7	D	136	146	Right-handed alpha
Helix 125	AN8	D	155	161	Right-handed 310
Helix 126	AN9	D	186	192	Right-handed alpha
Helix 127	AO1	D	197	211	Right-handed alpha
Helix 128	AO2	D	222	234	Right-handed alpha
Helix 129	AO3	D	254	264	Right-handed alpha
Helix 130	AO4	D	281	296	Right-handed alpha
Helix 131	AO5	E	14	22	Right-handed alpha
Helix 132	AO6	E	23	40	Right-handed alpha
Helix 133	AO7	E	47	54	Right-handed alpha
Helix 134	AO8	E	58	71	Right-handed alpha
Helix 135	AO9	E	81	85	Right-handed 310
Helix 136	AP1	E	86	95	Right-handed alpha
Helix 137	AP2	E	97	109	Right-handed alpha
Helix 138	AP3	E	115	124	Right-handed alpha
Helix 139	AP4	E	136	146	Right-handed alpha
Helix 140	AP5	E	155	160	Right-handed alpha
Helix 141	AP6	E	187	192	Right-handed alpha
Helix 142	AP7	E	192	197	Right-handed alpha
Helix 143	AP8	E	197	211	Right-handed alpha
Helix 144	AP9	E	222	234	Right-handed alpha
Helix 145	AQ1	E	236	240	Right-handed 310
Helix 146	AQ2	E	254	263	Right-handed alpha
Helix 147	AQ3	E	271	275	Right-handed alpha
Helix 148	AQ4	E	281	296	Right-handed alpha

There are 8 sheets in PDB entry 8WKT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	128	131	parallel
Strand 4	A	42	46	parallel
Strand 5	A	212	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	346	348	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	575	first strand
Strand 2	C	15	17	anti-parallel
Strand 3	C	22	24	anti-parallel
Strand 4	C	112	113	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel
Strand 6	B	244	247	parallel
Strand 7	B	267	270	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	346	348	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	38	45	anti-parallel
Strand 3	C	28	32	anti-parallel
Strand 4	C	87	88	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	169	parallel
Strand 3	D	128	131	parallel
Strand 4	D	42	46	parallel
Strand 5	D	212	218	parallel
Strand 6	D	244	247	parallel
Strand 7	D	267	270	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	152	first strand
Strand 2	E	166	169	parallel
Strand 3	E	128	131	parallel
Strand 4	E	42	46	parallel
Strand 5	E	212	215	parallel
Strand 6	E	244	247	parallel
Strand 7	E	267	270	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WKT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKT