Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WKX entry

There are 2 chains in PDB entry 8WKX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4ILE 1005
E
 LEU 15ILE 1005
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are110 helices in PDB entry 8WKX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
23 39Right-handed alpha
Helix 3
AA3
A
48 54Right-handed alpha
Helix 4
AA4
A
58 72Right-handed alpha
Helix 5
AA5
A
80 95Right-handed alpha
Helix 6
AA6
A
96 109Right-handed alpha
Helix 7
AA7
A
115 123Right-handed alpha
Helix 8
AA8
A
136 146Right-handed alpha
Helix 9
AA9
A
154 160Right-handed alpha
Helix 10
AB1
A
186 192Right-handed alpha
Helix 11
AB2
A
192 197Right-handed alpha
Helix 12
AB3
A
197 211Right-handed alpha
Helix 13
AB4
A
222 234Right-handed alpha
Helix 14
AB5
A
254 265Right-handed alpha
Helix 15
AB6
A
281 296Right-handed alpha
Helix 16
AB7
A
306 317Right-handed alpha
Helix 17
AB8
A
318 322Right-handed 310
Helix 18
AB9
A
329 334Right-handed alpha
Helix 19
AC1
A
355 366Right-handed alpha
Helix 20
AC2
A
374 392Right-handed alpha
Helix 21
AC3
A
411 416Right-handed alpha
Helix 22
AC4
A
417 427Right-handed alpha
Helix 23
AC5
A
431 443Right-handed alpha
Helix 24
AC6
A
447 461Right-handed alpha
Helix 25
AC7
A
468 496Right-handed alpha
Helix 26
AC8
A
508 520Right-handed alpha
Helix 27
AC9
A
525 529Right-handed 310
Helix 28
AD1
A
532 538Right-handed alpha
Helix 29
AD2
A
539 547Right-handed 310
Helix 30
AD3
A
551 570Right-handed alpha
Helix 31
AD4
A
582 594Right-handed alpha
Helix 32
AD5
A
610 622Right-handed alpha
Helix 33
AD6
A
623 626Right-handed 310
Helix 34
AD7
A
648 659Right-handed alpha
Helix 35
AD8
A
660 669Right-handed alpha
Helix 36
AD9
A
682 701Right-handed alpha
Helix 37
AE1
A
711 723Right-handed alpha
Helix 38
AE2
A
729 742Right-handed alpha
Helix 39
AE3
A
750 765Right-handed alpha
Helix 40
AE4
A
769 786Right-handed alpha
Helix 41
AE5
A
802 812Right-handed alpha
Helix 42
AE6
A
817 826Right-handed alpha
Helix 43
AE7
A
831 841Right-handed alpha
Helix 44
AE8
A
842 845Right-handed 310
Helix 45
AE9
A
846 855Right-handed alpha
Helix 46
AF1
A
861 872Right-handed alpha
Helix 47
AF2
A
878 903Right-handed alpha
Helix 48
AF3
A
911 922Right-handed alpha
Helix 49
AF4
A
928 934Right-handed 310
Helix 50
AF5
A
937 945Right-handed alpha
Helix 51
AF6
A
950 954Right-handed 310
Helix 52
AF7
A
955 962Right-handed 310
Helix 53
AF8
A
966 972Right-handed alpha
Helix 54
AF9
A
976 990Right-handed alpha
Helix 55
AG1
A
994 1003Right-handed alpha
Helix 56
AG2
E
16 20Right-handed alpha
Helix 57
AG3
E
26 39Right-handed alpha
Helix 58
AG4
E
48 54Right-handed alpha
Helix 59
AG5
E
58 71Right-handed alpha
Helix 60
AG6
E
82 93Right-handed alpha
Helix 61
AG7
E
96 109Right-handed alpha
Helix 62
AG8
E
115 124Right-handed alpha
Helix 63
AG9
E
136 146Right-handed alpha
Helix 64
AH1
E
179 183Right-handed 310
Helix 65
AH2
E
186 192Right-handed alpha
Helix 66
AH3
E
192 197Right-handed alpha
Helix 67
AH4
E
197 211Right-handed alpha
Helix 68
AH5
E
222 236Right-handed alpha
Helix 69
AH6
E
254 265Right-handed alpha
Helix 70
AH7
E
281 295Right-handed alpha
Helix 71
AH8
E
312 317Right-handed alpha
Helix 72
AH9
E
326 334Right-handed alpha
Helix 73
AI1
E
355 366Right-handed alpha
Helix 74
AI2
E
366 372Right-handed alpha
Helix 75
AI3
E
374 392Right-handed alpha
Helix 76
AI4
E
396 400Right-handed 310
Helix 77
AI5
E
411 416Right-handed alpha
Helix 78
AI6
E
418 427Right-handed alpha
Helix 79
AI7
E
431 446Right-handed alpha
Helix 80
AI8
E
452 465Right-handed alpha
Helix 81
AI9
E
470 492Right-handed alpha
Helix 82
AJ1
E
493 500Right-handed alpha
Helix 83
AJ2
E
508 520Right-handed alpha
Helix 84
AJ3
E
532 539Right-handed alpha
Helix 85
AJ4
E
540 545Right-handed 310
Helix 86
AJ5
E
561 568Right-handed alpha
Helix 87
AJ6
E
581 585Right-handed 310
Helix 88
AJ7
E
588 594Right-handed alpha
Helix 89
AJ8
E
608 616Right-handed alpha
Helix 90
AJ9
E
618 623Right-handed alpha
Helix 91
AK1
E
648 659Right-handed alpha
Helix 92
AK2
E
660 670Right-handed alpha
Helix 93
AK3
E
680 702Right-handed alpha
Helix 94
AK4
E
705 721Right-handed alpha
Helix 95
AK5
E
729 740Right-handed alpha
Helix 96
AK6
E
750 761Right-handed alpha
Helix 97
AK7
E
768 787Right-handed alpha
Helix 98
AK8
E
801 808Right-handed alpha
Helix 99
AK9
E
820 826Right-handed alpha
Helix 100
AL1
E
835 841Right-handed alpha
Helix 101
AL2
E
842 845Right-handed 310
Helix 102
AL3
E
846 857Right-handed alpha
Helix 103
AL4
E
861 871Right-handed alpha
Helix 104
AL5
E
878 895Right-handed alpha
Helix 105
AL6
E
912 920Right-handed alpha
Helix 106
AL7
E
928 933Right-handed 310
Helix 107
AL8
E
955 960Right-handed alpha
Helix 108
AL9
E
969 974Right-handed alpha
Helix 109
AM1
E
980 991Right-handed alpha
Helix 110
AM2
E
993 1003Right-handed alpha
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There are 4 sheets in PDB entry 8WKX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
166 169parallel
Strand 3
A
128 131parallel
Strand 4
A
42 46parallel
Strand 5
A
212 216parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
267 270parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
346 347anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
150 152first strand
Strand 2
E
166 169parallel
Strand 3
E
128 131parallel
Strand 4
E
42 46parallel
Strand 5
E
212 216parallel
Strand 6
E
244 247parallel
Strand 7
E
267 270parallel
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