Analysis of interatomic Contacts of Structural Units in PDB entry:
8WKY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WKY entry

There are 4 chains in PDB entry 8WKY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 43ASP 1003
A
 SER 1005GLY 2008
B
 ASP 3PRO 4
B
 ARG 6LYS 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8WKY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 72Right-handed alpha
Helix 2
AA2
A
73 76Right-handed 310
Helix 3
AA3
A
77 111Right-handed alpha
Helix 4
AA4
A
115 153Right-handed alpha
Helix 5
AA5
A
153 161Right-handed alpha
Helix 6
AA6
A
162 187Right-handed alpha
Helix 7
AA7
A
190 216Right-handed alpha
Helix 8
AA8
A
1008 1012Right-handed 310
Helix 9
AA9
A
1015 1027Right-handed alpha
Helix 10
AB1
A
1047 1060Right-handed alpha
Helix 11
AB2
A
1061 1065Right-handed 310
Helix 12
AB3
A
1076 1090Right-handed alpha
Helix 13
AB4
A
1101 1110Right-handed alpha
Helix 14
AB5
A
1125 1134Right-handed alpha
Helix 15
AB6
A
1144 1150Right-handed alpha
Helix 16
AB7
A
1162 1177Right-handed alpha
Helix 17
AB8
A
1181 1194Right-handed alpha
Helix 18
AB9
A
238 271Right-handed alpha
Helix 19
AC1
A
276 282Right-handed alpha
Helix 20
AC2
A
283 306Right-handed alpha
Helix 21
AC3
A
306 2002Right-handed alpha
Helix 22
AC4
A
2003 2008Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8WKY.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1093 1096first strand
Strand 2
A
1067 1075parallel
Strand 3
A
1033 1041parallel
Strand 4
A
1114 1117parallel
Strand 5
A
1137 1141parallel
Strand 6
A
1156 1158parallel
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