Analysis of interatomic Contacts of Structural Units in PDB entry:
8WLA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WLA entry

There are 2 chains in PDB entry 8WLA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 9GLY 186
B
 PRO 144TYR 1858
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 8WLA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 32Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
74 78Right-handed 310
Helix 4
AA4
A
93 103Right-handed alpha
Helix 5
AA5
A
103 112Right-handed alpha
Helix 6
AA6
A
129 137Right-handed alpha
Helix 7
AA7
A
145 156Right-handed alpha
Helix 8
AA8
A
171 186Right-handed alpha
Helix 9
AA9
B
148 154Right-handed alpha
Helix 10
AB1
B
160 176Right-handed alpha
Helix 11
AB2
B
178 199Right-handed alpha
Helix 12
AB3
B
201 214Right-handed alpha
Helix 13
AB4
B
219 229Right-handed alpha
Helix 14
AB5
B
232 244Right-handed alpha
Helix 15
AB6
B
281 296Right-handed alpha
Helix 16
AB7
B
297 316Right-handed alpha
Helix 17
AB8
B
317 320Right-handed 310
Helix 18
AB9
B
321 338Right-handed alpha
Helix 19
AC1
B
338 344Right-handed alpha
Helix 20
AC2
B
351 357Right-handed alpha
Helix 21
AC3
B
357 368Right-handed alpha
Helix 22
AC4
B
383 387Right-handed 310
Helix 23
AC5
B
389 396Right-handed alpha
Helix 24
AC6
B
399 405Right-handed alpha
Helix 25
AC7
B
413 417Right-handed 310
Helix 26
AC8
B
418 427Right-handed alpha
Helix 27
AC9
B
443 452Right-handed alpha
Helix 28
AD1
B
452 470Right-handed alpha
Helix 29
AD2
B
471 476Right-handed alpha
Helix 30
AD3
B
489 518Right-handed alpha
Helix 31
AD4
B
524 551Right-handed alpha
Helix 32
AD5
B
551 557Right-handed alpha
Helix 33
AD6
B
559 583Right-handed alpha
Helix 34
AD7
B
589 594Right-handed alpha
Helix 35
AD8
B
603 608Right-handed alpha
Helix 36
AD9
B
615 654Right-handed alpha
Helix 37
AE1
B
664 670Right-handed alpha
Helix 38
AE2
B
671 712Right-handed alpha
Helix 39
AE3
B
718 734Right-handed alpha
Helix 40
AE4
B
745 764Right-handed alpha
Helix 41
AE5
B
768 775Right-handed alpha
Helix 42
AE6
B
785 790Right-handed alpha
Helix 43
AE7
B
793 799Right-handed alpha
Helix 44
AE8
B
813 828Right-handed alpha
Helix 45
AE9
B
835 839Right-handed 310
Helix 46
AF1
B
856 861Right-handed alpha
Helix 47
AF2
B
871 880Right-handed alpha
Helix 48
AF3
B
880 890Right-handed alpha
Helix 49
AF4
B
891 902Right-handed alpha
Helix 50
AF5
B
903 905Right-handed 310
Helix 51
AF6
B
932 947Right-handed alpha
Helix 52
AF7
B
949 972Right-handed alpha
Helix 53
AF8
B
972 980Right-handed alpha
Helix 54
AF9
B
982 997Right-handed alpha
Helix 55
AG1
B
1006 1010Right-handed 310
Helix 56
AG2
B
1011 1025Right-handed alpha
Helix 57
AG3
B
1081 1091Right-handed alpha
Helix 58
AG4
B
1108 1114Right-handed alpha
Helix 59
AG5
B
1114 1121Right-handed alpha
Helix 60
AG6
B
1138 1142Right-handed 310
Helix 61
AG7
B
1177 1189Right-handed alpha
Helix 62
AG8
B
1201 1207Right-handed alpha
Helix 63
AG9
B
1222 1233Right-handed alpha
Helix 64
AH1
B
1267 1271Right-handed 310
Helix 65
AH2
B
1272 1282Right-handed alpha
Helix 66
AH3
B
1283 1294Right-handed alpha
Helix 67
AH4
B
1294 1325Right-handed alpha
Helix 68
AH5
B
1348 1377Right-handed alpha
Helix 69
AH6
B
1437 1446Right-handed alpha
Helix 70
AH7
B
1449 1467Right-handed alpha
Helix 71
AH8
B
1469 1490Right-handed alpha
Helix 72
AH9
B
1495 1512Right-handed alpha
Helix 73
AI1
B
1521 1534Right-handed alpha
Helix 74
AI2
B
1556 1583Right-handed alpha
Helix 75
AI3
B
1597 1623Right-handed alpha
Helix 76
AI4
B
1641 1665Right-handed alpha
Helix 77
AI5
B
1668 1696Right-handed alpha
Helix 78
AI6
B
1725 1760Right-handed alpha
Helix 79
AI7
B
1763 1774Right-handed alpha
Helix 80
AI8
B
1786 1825Right-handed alpha
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There are 4 sheets in PDB entry 8WLA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 53first strand
Strand 2
A
56 64anti-parallel
Strand 3
A
12 17parallel
Strand 4
A
82 88parallel
Strand 5
A
118 119parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 373first strand
Strand 2
B
376 379anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1068 1072first strand
Strand 2
B
1046 1053anti-parallel
Strand 3
B
1029 1036anti-parallel
Strand 4
B
998 1004parallel
Strand 5
B
842 848parallel
Strand 6
B
1097 1100parallel
Strand 7
B
1198 1200anti-parallel
Strand 8
B
1148 1153anti-parallel
Strand 9
B
1235 1239parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1105 1106first strand
Strand 2
B
1245 1246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il