Analysis of interatomic Contacts of Structural Units in PDB entry:
8WLJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WLJ entry

There are 2 chains in PDB entry 8WLJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 11GLY 487
D
 VAL 4SER 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8WLJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 54Right-handed alpha
Helix 2
AA2
A
124 157Right-handed alpha
Helix 3
AA3
A
158 179Right-handed alpha
Helix 4
AA4
A
181 211Right-handed alpha
Helix 5
AA5
A
213 246Right-handed alpha
Helix 6
AA6
A
249 270Right-handed alpha
Helix 7
AA7
A
284 289Right-handed alpha
Helix 8
AA8
A
291 324Right-handed alpha
Helix 9
AA9
A
328 356Right-handed alpha
Helix 10
AB1
A
356 378Right-handed alpha
Helix 11
AB2
A
380 414Right-handed alpha
Helix 12
AB3
A
418 436Right-handed alpha
Helix 13
AB4
A
436 447Right-handed alpha
Helix 14
AB5
A
448 464Right-handed alpha
Helix 15
AB6
A
465 471Right-handed 310
Helix 16
AB7
A
475 487Right-handed alpha
Helix 17
AB8
D
30 37Right-handed alpha
Helix 18
AB9
D
91 95Right-handed 310
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There are 2 sheets in PDB entry 8WLJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 9first strand
Strand 2
D
20 25anti-parallel
Strand 3
D
82 87anti-parallel
Strand 4
D
72 76anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 14first strand
Strand 2
D
118 122parallel
Strand 3
D
96 103anti-parallel
Strand 4
D
38 44anti-parallel
Strand 5
D
54 56anti-parallel
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