Analysis of interatomic Contacts of Structural Units in PDB entry:
8WLY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WLY entry

There are 3 chains in PDB entry 8WLY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 19	GLU 1127
B	LYS 19	GLU 1127
C	LYS 19	GLU 1127

There are 44 helices in PDB entry 8WLY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	282	292	Right-handed alpha
Helix 2	AA2	A	720	726	Right-handed alpha
Helix 3	AA3	A	734	738	Right-handed 310
Helix 4	AA4	A	741	766	Right-handed alpha
Helix 5	AA5	A	799	809	Right-handed alpha
Helix 6	AA6	A	849	868	Right-handed alpha
Helix 7	AA7	A	880	892	Right-handed alpha
Helix 8	AA8	A	895	923	Right-handed alpha
Helix 9	AA9	A	928	948	Right-handed alpha
Helix 10	AB1	A	949	951	Right-handed 310
Helix 11	AB2	A	959	967	Right-handed alpha
Helix 12	AB3	A	968	1015	Right-handed alpha
Helix 13	AB4	B	269	271	Right-handed 310
Helix 14	AB5	B	282	292	Right-handed alpha
Helix 15	AB6	B	325	331	Right-handed alpha
Helix 16	AB7	B	352	360	Right-handed alpha
Helix 17	AB8	B	372	377	Right-handed 310
Helix 18	AB9	B	392	396	Right-handed alpha
Helix 19	AC1	B	404	410	Right-handed alpha
Helix 20	AC2	B	426	431	Right-handed alpha
Helix 21	AC3	B	733	739	Right-handed alpha
Helix 22	AC4	B	741	766	Right-handed alpha
Helix 23	AC5	B	799	809	Right-handed alpha
Helix 24	AC6	B	849	868	Right-handed alpha
Helix 25	AC7	B	869	873	Right-handed 310
Helix 26	AC8	B	880	892	Right-handed alpha
Helix 27	AC9	B	895	902	Right-handed alpha
Helix 28	AD1	B	902	923	Right-handed alpha
Helix 29	AD2	B	928	950	Right-handed alpha
Helix 30	AD3	B	959	967	Right-handed alpha
Helix 31	AD4	B	968	1016	Right-handed alpha
Helix 32	AD5	C	282	292	Right-handed alpha
Helix 33	AD6	C	720	726	Right-handed alpha
Helix 34	AD7	C	733	739	Right-handed alpha
Helix 35	AD8	C	741	766	Right-handed alpha
Helix 36	AD9	C	799	810	Right-handed alpha
Helix 37	AE1	C	849	867	Right-handed alpha
Helix 38	AE2	C	868	873	Right-handed 310
Helix 39	AE3	C	880	893	Right-handed alpha
Helix 40	AE4	C	895	902	Right-handed alpha
Helix 41	AE5	C	902	923	Right-handed alpha
Helix 42	AE6	C	928	948	Right-handed alpha
Helix 43	AE7	C	959	967	Right-handed alpha
Helix 44	AE8	C	968	1016	Right-handed alpha

There are 42 sheets in PDB entry 8WLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	66	72	anti-parallel
Strand 3	A	251	257	anti-parallel
Strand 4	A	88	94	anti-parallel
Strand 5	A	182	191	anti-parallel
Strand 6	A	194	202	anti-parallel
Strand 7	A	216	224	anti-parallel
Strand 8	A	41	42	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	C	552	554	parallel
Strand 3	C	560	564	anti-parallel
Strand 4	C	571	575	anti-parallel
Strand 5	C	533	541	anti-parallel
Strand 6	C	525	530	anti-parallel
Strand 7	C	312	315	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	60	first strand
Strand 2	A	259	267	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	231	238	anti-parallel
Strand 3	A	139	140	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	231	238	anti-parallel
Strand 3	A	99	105	anti-parallel
Strand 4	A	114	118	anti-parallel
Strand 5	A	125	129	anti-parallel
Strand 6	A	162	165	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	302	first strand
Strand 2	A	583	586	anti-parallel
Strand 3	A	596	598	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	530	first strand
Strand 2	A	533	541	anti-parallel
Strand 3	A	571	575	anti-parallel
Strand 4	A	560	564	anti-parallel
Strand 5	A	552	554	anti-parallel
Strand 6	B	47	48	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	631	first strand
Strand 2	A	636	637	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	642	first strand
Strand 2	A	674	679	parallel
Strand 3	A	657	662	anti-parallel
Strand 4	A	651	654	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	686	first strand
Strand 2	B	770	772	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	711	first strand
Strand 2	A	1042	1059	anti-parallel
Strand 3	A	1030	1039	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	719	first strand
Strand 2	A	841	844	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	772	first strand
Strand 2	C	684	686	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	779	780	first strand
Strand 2	A	783	784	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1103	1105	first strand
Strand 2	A	1070	1073	anti-parallel
Strand 3	A	1064	1065	anti-parallel
Strand 4	A	1116	1117	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1077	1080	first strand
Strand 2	A	1085	1088	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	66	71	anti-parallel
Strand 3	B	251	257	anti-parallel
Strand 4	B	88	94	anti-parallel
Strand 5	B	182	191	anti-parallel
Strand 6	B	194	203	anti-parallel
Strand 7	B	214	223	anti-parallel
Strand 8	B	38	42	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	60	first strand
Strand 2	B	259	267	anti-parallel
Strand 3	B	273	278	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	231	238	anti-parallel
Strand 3	B	138	141	parallel
Strand 4	B	148	149	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	231	238	anti-parallel
Strand 3	B	99	105	anti-parallel
Strand 4	B	109	119	anti-parallel
Strand 5	B	123	132	anti-parallel
Strand 6	B	162	168	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	306	first strand
Strand 2	B	580	586	anti-parallel
Strand 3	B	596	599	anti-parallel
Strand 4	B	635	638	anti-parallel
Strand 5	B	629	632	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	379	391	anti-parallel
Strand 3	B	494	503	anti-parallel
Strand 4	B	419	425	anti-parallel
Strand 5	B	364	367	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	379	391	anti-parallel
Strand 3	B	511	512	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	442	first strand
Strand 2	B	479	480	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	530	first strand
Strand 2	B	533	541	anti-parallel
Strand 3	B	571	575	anti-parallel
Strand 4	B	562	564	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	676	679	parallel
Strand 3	B	657	660	anti-parallel
Strand 4	B	651	654	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	686	first strand
Strand 2	C	770	772	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	694	711	first strand
Strand 2	B	1042	1059	anti-parallel
Strand 3	B	1030	1039	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	719	first strand
Strand 2	B	841	843	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	779	780	first strand
Strand 2	B	783	784	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1103	1108	first strand
Strand 2	B	1069	1073	anti-parallel
Strand 3	B	1064	1065	anti-parallel
Strand 4	B	1116	1117	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1077	1080	first strand
Strand 2	B	1085	1088	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	66	71	anti-parallel
Strand 3	C	252	257	anti-parallel
Strand 4	C	88	94	anti-parallel
Strand 5	C	182	191	anti-parallel
Strand 6	C	194	202	anti-parallel
Strand 7	C	216	223	anti-parallel
Strand 8	C	41	42	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	57	first strand
Strand 2	C	262	267	anti-parallel
Strand 3	C	273	278	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	138	141	anti-parallel
Strand 3	C	231	238	parallel
Strand 4	C	99	105	anti-parallel
Strand 5	C	114	119	anti-parallel
Strand 6	C	123	133	anti-parallel
Strand 7	C	154	168	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	300	first strand
Strand 2	C	582	586	anti-parallel
Strand 3	C	596	599	anti-parallel
Strand 4	C	636	638	anti-parallel
Strand 5	C	629	631	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	641	642	first strand
Strand 2	C	675	679	parallel
Strand 3	C	657	661	anti-parallel
Strand 4	C	651	654	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	711	first strand
Strand 2	C	1042	1061	anti-parallel
Strand 3	C	1030	1039	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	711	first strand
Strand 2	C	1042	1061	anti-parallel
Strand 3	C	1077	1080	anti-parallel
Strand 4	C	1085	1088	anti-parallel
Strand 5	C	1096	1097	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	717	719	first strand
Strand 2	C	841	843	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	779	780	first strand
Strand 2	C	783	784	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1103	1104	first strand
Strand 2	C	1070	1073	anti-parallel
Strand 3	C	1064	1065	anti-parallel
Strand 4	C	1116	1117	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WLY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WLY