Analysis of interatomic Contacts of Structural Units in PDB entry:
8WM1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WM1 entry

There are 4 chains in PDB entry 8WM1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 21	LYS 484
B	ALA 21	LYS 484
C	ALA 21	LYS 484
D	ALA 21	LYS 484

There are 16 helices in PDB entry 8WM1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	47	Right-handed alpha
Helix 2	AA2	A	86	91	Right-handed alpha
Helix 3	AA3	A	105	110	Right-handed 310
Helix 4	AA4	A	390	394	Right-handed 310
Helix 5	AA5	B	37	47	Right-handed alpha
Helix 6	AA6	B	86	91	Right-handed alpha
Helix 7	AA7	B	105	110	Right-handed 310
Helix 8	AA8	B	389	394	Right-handed 310
Helix 9	AA9	C	37	47	Right-handed alpha
Helix 10	AB1	C	86	91	Right-handed alpha
Helix 11	AB2	C	105	110	Right-handed 310
Helix 12	AB3	C	389	394	Right-handed 310
Helix 13	AB4	D	37	47	Right-handed alpha
Helix 14	AB5	D	86	91	Right-handed alpha
Helix 15	AB6	D	105	110	Right-handed 310
Helix 16	AB7	D	389	394	Right-handed 310

There are 20 sheets in PDB entry 8WM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	54	57	parallel
Strand 3	A	81	84	parallel
Strand 4	A	139	141	parallel
Strand 5	A	161	163	parallel
Strand 6	A	196	198	parallel
Strand 7	A	219	221	parallel
Strand 8	A	247	249	parallel
Strand 9	A	269	271	parallel
Strand 10	A	290	292	parallel
Strand 11	A	316	318	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	94	97	parallel
Strand 3	A	143	146	parallel
Strand 4	A	166	168	parallel
Strand 5	A	201	203	parallel
Strand 6	A	224	226	parallel
Strand 7	A	252	254	parallel
Strand 8	A	274	276	parallel
Strand 9	A	295	297	parallel
Strand 10	A	321	323	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	133	first strand
Strand 2	A	150	155	parallel
Strand 3	A	176	179	parallel
Strand 4	A	209	212	parallel
Strand 5	A	236	240	parallel
Strand 6	A	258	262	parallel
Strand 7	A	280	284	parallel
Strand 8	A	301	305	parallel
Strand 9	A	345	349	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	402	first strand
Strand 2	A	405	411	anti-parallel
Strand 3	A	449	454	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	443	first strand
Strand 2	A	417	425	anti-parallel
Strand 3	A	462	469	anti-parallel
Strand 4	A	481	482	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	54	57	parallel
Strand 3	B	81	84	parallel
Strand 4	B	139	141	parallel
Strand 5	B	161	163	parallel
Strand 6	B	196	198	parallel
Strand 7	B	219	221	parallel
Strand 8	B	247	249	parallel
Strand 9	B	269	271	parallel
Strand 10	B	290	292	parallel
Strand 11	B	316	318	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	94	97	parallel
Strand 3	B	143	146	parallel
Strand 4	B	166	168	parallel
Strand 5	B	201	203	parallel
Strand 6	B	224	226	parallel
Strand 7	B	252	254	parallel
Strand 8	B	274	276	parallel
Strand 9	B	295	297	parallel
Strand 10	B	321	323	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	133	first strand
Strand 2	B	150	155	parallel
Strand 3	B	176	179	parallel
Strand 4	B	209	212	parallel
Strand 5	B	236	240	parallel
Strand 6	B	258	262	parallel
Strand 7	B	280	284	parallel
Strand 8	B	301	305	parallel
Strand 9	B	345	349	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	402	first strand
Strand 2	B	405	411	anti-parallel
Strand 3	B	449	454	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	443	first strand
Strand 2	B	417	425	anti-parallel
Strand 3	B	462	469	anti-parallel
Strand 4	B	481	482	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	26	first strand
Strand 2	C	54	57	parallel
Strand 3	C	81	84	parallel
Strand 4	C	139	141	parallel
Strand 5	C	161	163	parallel
Strand 6	C	196	198	parallel
Strand 7	C	219	221	parallel
Strand 8	C	247	249	parallel
Strand 9	C	269	271	parallel
Strand 10	C	290	292	parallel
Strand 11	C	316	318	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	94	97	parallel
Strand 3	C	143	146	parallel
Strand 4	C	166	168	parallel
Strand 5	C	201	203	parallel
Strand 6	C	224	226	parallel
Strand 7	C	252	254	parallel
Strand 8	C	274	276	parallel
Strand 9	C	295	297	parallel
Strand 10	C	321	323	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	133	first strand
Strand 2	C	150	155	parallel
Strand 3	C	176	179	parallel
Strand 4	C	209	212	parallel
Strand 5	C	236	240	parallel
Strand 6	C	258	262	parallel
Strand 7	C	280	284	parallel
Strand 8	C	301	305	parallel
Strand 9	C	345	349	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	402	first strand
Strand 2	C	405	411	anti-parallel
Strand 3	C	449	454	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	435	443	first strand
Strand 2	C	417	425	anti-parallel
Strand 3	C	462	469	anti-parallel
Strand 4	C	481	482	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	26	first strand
Strand 2	D	54	57	parallel
Strand 3	D	81	84	parallel
Strand 4	D	139	141	parallel
Strand 5	D	161	163	parallel
Strand 6	D	196	198	parallel
Strand 7	D	219	221	parallel
Strand 8	D	247	249	parallel
Strand 9	D	269	271	parallel
Strand 10	D	290	292	parallel
Strand 11	D	316	318	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	68	first strand
Strand 2	D	94	97	parallel
Strand 3	D	143	146	parallel
Strand 4	D	166	168	parallel
Strand 5	D	201	203	parallel
Strand 6	D	224	226	parallel
Strand 7	D	252	254	parallel
Strand 8	D	274	276	parallel
Strand 9	D	295	297	parallel
Strand 10	D	321	323	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	133	first strand
Strand 2	D	150	155	parallel
Strand 3	D	176	179	parallel
Strand 4	D	209	212	parallel
Strand 5	D	236	240	parallel
Strand 6	D	258	262	parallel
Strand 7	D	280	284	parallel
Strand 8	D	301	305	parallel
Strand 9	D	345	349	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	402	first strand
Strand 2	D	405	411	anti-parallel
Strand 3	D	449	454	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	443	first strand
Strand 2	D	417	425	anti-parallel
Strand 3	D	462	469	anti-parallel
Strand 4	D	481	482	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WM1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WM1