Analysis of interatomic Contacts of Structural Units in PDB entry:
8WM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WM2 entry

There are 2 chains in PDB entry 8WM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13TRP 325
B
 GLN 16TRP 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8WM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 33Right-handed alpha
Helix 2
AA2
A
36 45Right-handed alpha
Helix 3
AA3
A
75 90Right-handed alpha
Helix 4
AA4
A
100 104Right-handed 310
Helix 5
AA5
A
106 116Right-handed alpha
Helix 6
AA6
A
129 140Right-handed alpha
Helix 7
AA7
A
150 158Right-handed alpha
Helix 8
AA8
A
166 168Right-handed 310
Helix 9
AA9
A
169 178Right-handed alpha
Helix 10
AB1
A
193 207Right-handed alpha
Helix 11
AB2
A
228 243Right-handed alpha
Helix 12
AB3
A
266 270Right-handed 310
Helix 13
AB4
A
272 276Right-handed 310
Helix 14
AB5
A
308 322Right-handed alpha
Helix 15
AB6
B
17 33Right-handed alpha
Helix 16
AB7
B
36 45Right-handed alpha
Helix 17
AB8
B
75 90Right-handed alpha
Helix 18
AB9
B
100 104Right-handed 310
Helix 19
AC1
B
106 116Right-handed alpha
Helix 20
AC2
B
129 141Right-handed alpha
Helix 21
AC3
B
150 158Right-handed alpha
Helix 22
AC4
B
166 168Right-handed 310
Helix 23
AC5
B
169 178Right-handed alpha
Helix 24
AC6
B
193 207Right-handed alpha
Helix 25
AC7
B
228 242Right-handed alpha
Helix 26
AC8
B
272 276Right-handed 310
Helix 27
AC9
B
308 322Right-handed alpha
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There are 2 sheets in PDB entry 8WM2. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
210 216parallel
Strand 3
A
182 190parallel
Strand 4
A
144 148parallel
Strand 5
A
120 125parallel
Strand 6
A
93 98parallel
Strand 7
A
47 53parallel
Strand 8
A
282 285parallel
Strand 9
A
290 292anti-parallel
Strand 10
A
302 303anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 256first strand
Strand 2
B
210 215parallel
Strand 3
B
182 189parallel
Strand 4
B
144 148parallel
Strand 5
B
120 125parallel
Strand 6
B
93 98parallel
Strand 7
B
47 53parallel
Strand 8
B
282 285parallel
Strand 9
B
290 292anti-parallel
Strand 10
B
302 303anti-parallel
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