Analysis of interatomic Contacts of Structural Units in PDB entry:
8WM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WM3 entry

There are 4 chains in PDB entry 8WM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 12	LEU 583
B	SER 20	ARG 768
C	LEU 12	LEU 583
D	SER 20	ARG 768

There are133 helices in PDB entry 8WM3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	20	Right-handed alpha
Helix 2	AA2	A	21	23	Right-handed 310
Helix 3	AA3	A	24	29	Right-handed alpha
Helix 4	AA4	A	30	38	Right-handed alpha
Helix 5	AA5	A	40	53	Right-handed alpha
Helix 6	AA6	A	54	70	Right-handed alpha
Helix 7	AA7	A	72	81	Right-handed alpha
Helix 8	AA8	A	82	85	Right-handed 310
Helix 9	AA9	A	86	116	Right-handed alpha
Helix 10	AB1	A	136	142	Right-handed alpha
Helix 11	AB2	A	143	151	Right-handed alpha
Helix 12	AB3	A	168	188	Right-handed alpha
Helix 13	AB4	A	195	216	Right-handed alpha
Helix 14	AB5	A	219	229	Right-handed alpha
Helix 15	AB6	A	232	237	Right-handed alpha
Helix 16	AB7	A	238	253	Right-handed alpha
Helix 17	AB8	A	257	266	Right-handed alpha
Helix 18	AB9	A	271	322	Right-handed alpha
Helix 19	AC1	A	332	344	Right-handed alpha
Helix 20	AC2	A	344	352	Right-handed alpha
Helix 21	AC3	A	353	355	Right-handed 310
Helix 22	AC4	A	359	366	Right-handed alpha
Helix 23	AC5	A	372	383	Right-handed alpha
Helix 24	AC6	A	387	420	Right-handed alpha
Helix 25	AC7	A	421	426	Right-handed alpha
Helix 26	AC8	A	429	445	Right-handed alpha
Helix 27	AC9	A	446	450	Right-handed 310
Helix 28	AD1	A	452	462	Right-handed alpha
Helix 29	AD2	A	467	482	Right-handed alpha
Helix 30	AD3	A	505	511	Right-handed alpha
Helix 31	AD4	A	511	532	Right-handed alpha
Helix 32	AD5	A	552	568	Right-handed alpha
Helix 33	AD6	A	568	583	Right-handed alpha
Helix 34	AD7	B	21	53	Right-handed alpha
Helix 35	AD8	B	55	81	Right-handed alpha
Helix 36	AD9	B	90	102	Right-handed alpha
Helix 37	AE1	B	104	108	Right-handed 310
Helix 38	AE2	B	109	130	Right-handed alpha
Helix 39	AE3	B	147	155	Right-handed alpha
Helix 40	AE4	B	157	194	Right-handed alpha
Helix 41	AE5	B	198	205	Right-handed alpha
Helix 42	AE6	B	220	248	Right-handed alpha
Helix 43	AE7	B	265	267	Right-handed 310
Helix 44	AE8	B	275	282	Right-handed 310
Helix 45	AE9	B	295	300	Right-handed alpha
Helix 46	AF1	B	305	319	Right-handed alpha
Helix 47	AF2	B	325	330	Right-handed alpha
Helix 48	AF3	B	365	385	Right-handed alpha
Helix 49	AF4	B	389	393	Right-handed 310
Helix 50	AF5	B	400	414	Right-handed alpha
Helix 51	AF6	B	414	422	Right-handed alpha
Helix 52	AF7	B	431	465	Right-handed alpha
Helix 53	AF8	B	469	471	Right-handed 310
Helix 54	AF9	B	472	484	Right-handed alpha
Helix 55	AG1	B	499	503	Right-handed 310
Helix 56	AG2	B	505	509	Right-handed 310
Helix 57	AG3	B	513	531	Right-handed alpha
Helix 58	AG4	B	538	542	Right-handed 310
Helix 59	AG5	B	547	559	Right-handed alpha
Helix 60	AG6	B	565	574	Right-handed alpha
Helix 61	AG7	B	581	599	Right-handed alpha
Helix 62	AG8	B	623	628	Right-handed alpha
Helix 63	AG9	B	636	658	Right-handed alpha
Helix 64	AH1	B	666	668	Right-handed 310
Helix 65	AH2	B	696	713	Right-handed alpha
Helix 66	AH3	B	714	716	Right-handed 310
Helix 67	AH4	B	740	768	Right-handed alpha
Helix 68	AH5	C	13	20	Right-handed alpha
Helix 69	AH6	C	21	23	Right-handed 310
Helix 70	AH7	C	30	38	Right-handed alpha
Helix 71	AH8	C	40	54	Right-handed alpha
Helix 72	AH9	C	54	70	Right-handed alpha
Helix 73	AI1	C	72	81	Right-handed alpha
Helix 74	AI2	C	86	116	Right-handed alpha
Helix 75	AI3	C	136	142	Right-handed alpha
Helix 76	AI4	C	143	151	Right-handed alpha
Helix 77	AI5	C	168	188	Right-handed alpha
Helix 78	AI6	C	194	216	Right-handed alpha
Helix 79	AI7	C	219	229	Right-handed alpha
Helix 80	AI8	C	232	237	Right-handed alpha
Helix 81	AI9	C	238	253	Right-handed alpha
Helix 82	AJ1	C	257	266	Right-handed alpha
Helix 83	AJ2	C	271	322	Right-handed alpha
Helix 84	AJ3	C	332	344	Right-handed alpha
Helix 85	AJ4	C	344	352	Right-handed alpha
Helix 86	AJ5	C	353	355	Right-handed 310
Helix 87	AJ6	C	359	366	Right-handed alpha
Helix 88	AJ7	C	372	383	Right-handed alpha
Helix 89	AJ8	C	387	420	Right-handed alpha
Helix 90	AJ9	C	421	426	Right-handed alpha
Helix 91	AK1	C	429	445	Right-handed alpha
Helix 92	AK2	C	446	449	Right-handed 310
Helix 93	AK3	C	452	462	Right-handed alpha
Helix 94	AK4	C	467	482	Right-handed alpha
Helix 95	AK5	C	505	510	Right-handed alpha
Helix 96	AK6	C	511	532	Right-handed alpha
Helix 97	AK7	C	552	568	Right-handed alpha
Helix 98	AK8	C	568	583	Right-handed alpha
Helix 99	AK9	D	21	53	Right-handed alpha
Helix 100	AL1	D	55	81	Right-handed alpha
Helix 101	AL2	D	90	102	Right-handed alpha
Helix 102	AL3	D	103	108	Right-handed 310
Helix 103	AL4	D	109	130	Right-handed alpha
Helix 104	AL5	D	147	155	Right-handed alpha
Helix 105	AL6	D	157	193	Right-handed alpha
Helix 106	AL7	D	198	205	Right-handed alpha
Helix 107	AL8	D	220	252	Right-handed alpha
Helix 108	AL9	D	265	267	Right-handed 310
Helix 109	AM1	D	275	282	Right-handed 310
Helix 110	AM2	D	293	300	Right-handed alpha
Helix 111	AM3	D	305	319	Right-handed alpha
Helix 112	AM4	D	324	330	Right-handed alpha
Helix 113	AM5	D	365	385	Right-handed alpha
Helix 114	AM6	D	389	393	Right-handed 310
Helix 115	AM7	D	400	414	Right-handed alpha
Helix 116	AM8	D	414	422	Right-handed alpha
Helix 117	AM9	D	431	465	Right-handed alpha
Helix 118	AN1	D	469	471	Right-handed 310
Helix 119	AN2	D	472	484	Right-handed alpha
Helix 120	AN3	D	499	503	Right-handed 310
Helix 121	AN4	D	505	509	Right-handed 310
Helix 122	AN5	D	513	530	Right-handed alpha
Helix 123	AN6	D	538	542	Right-handed 310
Helix 124	AN7	D	547	559	Right-handed alpha
Helix 125	AN8	D	565	573	Right-handed alpha
Helix 126	AN9	D	581	588	Right-handed alpha
Helix 127	AO1	D	588	599	Right-handed alpha
Helix 128	AO2	D	623	628	Right-handed alpha
Helix 129	AO3	D	636	658	Right-handed alpha
Helix 130	AO4	D	666	668	Right-handed 310
Helix 131	AO5	D	696	713	Right-handed alpha
Helix 132	AO6	D	714	716	Right-handed 310
Helix 133	AO7	D	740	767	Right-handed alpha

There are 10 sheets in PDB entry 8WM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	538	first strand
Strand 2	A	547	550	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	487	488	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	358	359	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	673	first strand
Strand 2	B	680	687	anti-parallel
Strand 3	B	690	694	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	673	first strand
Strand 2	B	680	687	anti-parallel
Strand 3	B	618	622	anti-parallel
Strand 4	B	722	723	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	538	first strand
Strand 2	C	547	550	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	487	488	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	348	first strand
Strand 2	D	358	359	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	670	673	first strand
Strand 2	D	680	687	anti-parallel
Strand 3	D	690	694	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	670	673	first strand
Strand 2	D	680	687	anti-parallel
Strand 3	D	618	622	anti-parallel
Strand 4	D	722	723	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WM3