Analysis of interatomic Contacts of Structural Units in PDB entry:
8WM4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WM4 entry

There are 2 chains in PDB entry 8WM4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 1601
R	U 0	A 37

There are 38 helices in PDB entry 8WM4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	36	Right-handed alpha
Helix 2	AA2	A	37	39	Right-handed 310
Helix 3	AA3	A	57	76	Right-handed alpha
Helix 4	AA4	A	123	130	Right-handed alpha
Helix 5	AA5	A	163	168	Right-handed alpha
Helix 6	AA6	A	210	225	Right-handed alpha
Helix 7	AA7	A	261	276	Right-handed alpha
Helix 8	AA8	A	281	292	Right-handed alpha
Helix 9	AA9	A	293	295	Right-handed 310
Helix 10	AB1	A	296	301	Right-handed 310
Helix 11	AB2	A	328	338	Right-handed alpha
Helix 12	AB3	A	340	344	Right-handed 310
Helix 13	AB4	A	345	364	Right-handed alpha
Helix 14	AB5	A	443	460	Right-handed alpha
Helix 15	AB6	A	474	481	Right-handed alpha
Helix 16	AB7	A	542	555	Right-handed alpha
Helix 17	AB8	A	584	595	Right-handed alpha
Helix 18	AB9	A	596	598	Right-handed 310
Helix 19	AC1	A	599	610	Right-handed alpha
Helix 20	AC2	A	642	648	Right-handed alpha
Helix 21	AC3	A	675	691	Right-handed alpha
Helix 22	AC4	A	708	715	Right-handed alpha
Helix 23	AC5	A	780	785	Right-handed alpha
Helix 24	AC6	A	785	801	Right-handed alpha
Helix 25	AC7	A	829	833	Right-handed 310
Helix 26	AC8	A	946	962	Right-handed alpha
Helix 27	AC9	A	1233	1247	Right-handed alpha
Helix 28	AD1	A	1300	1305	Right-handed 310
Helix 29	AD2	A	1342	1349	Right-handed alpha
Helix 30	AD3	A	1395	1400	Right-handed alpha
Helix 31	AD4	A	1420	1426	Right-handed alpha
Helix 32	AD5	A	1464	1477	Right-handed alpha
Helix 33	AD6	A	1488	1492	Right-handed 310
Helix 34	AD7	A	1518	1534	Right-handed alpha
Helix 35	AD8	A	1538	1548	Right-handed alpha
Helix 36	AD9	A	1565	1569	Right-handed 310
Helix 37	AE1	A	1575	1581	Right-handed alpha
Helix 38	AE2	A	1588	1593	Right-handed alpha

There are 19 sheets in PDB entry 8WM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	202	first strand
Strand 2	A	7	11	anti-parallel
Strand 3	A	231	236	anti-parallel
Strand 4	A	227	228	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	185	191	anti-parallel
Strand 3	A	169	175	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	52	55	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	204	205	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	527	534	anti-parallel
Strand 3	A	403	412	anti-parallel
Strand 4	A	569	580	anti-parallel
Strand 5	A	557	558	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	442	first strand
Strand 2	A	488	489	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	501	first strand
Strand 2	A	517	521	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	664	first strand
Strand 2	A	667	674	anti-parallel
Strand 3	A	728	730	anti-parallel
Strand 4	A	770	779	anti-parallel
Strand 5	A	723	725	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	664	first strand
Strand 2	A	667	674	anti-parallel
Strand 3	A	728	730	anti-parallel
Strand 4	A	770	779	anti-parallel
Strand 5	A	625	634	anti-parallel
Strand 6	A	819	823	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	693	first strand
Strand 2	A	696	697	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	741	first strand
Strand 2	A	757	759	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	861	862	first strand
Strand 2	A	1558	1559	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	866	867	first strand
Strand 2	A	1413	1414	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	945	first strand
Strand 2	A	1362	1364	anti-parallel
Strand 3	A	1453	1463	anti-parallel
Strand 4	A	1357	1359	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	945	first strand
Strand 2	A	1362	1364	anti-parallel
Strand 3	A	1453	1463	anti-parallel
Strand 4	A	891	901	anti-parallel
Strand 5	A	1495	1503	anti-parallel
Strand 6	A	1483	1484	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	908	909	first strand
Strand 2	A	935	936	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	978	first strand
Strand 2	A	1294	1296	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1276	1280	first strand
Strand 2	A	1283	1288	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1386	1387	first strand
Strand 2	A	1444	1445	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WM4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WM4