Analysis of interatomic Contacts of Structural Units in PDB entry:
8WM7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WM7 entry

There are 7 chains in PDB entry 8WM7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 22	VAL 274
A	LEU 22	VAL 274
C	THR 3	GLY 660
D	THR 17	PHE 273
E	MET 1	VAL 112
F	MET 1	ASN 108
G	MET 1	ASN 108

There are 74 helices in PDB entry 8WM7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	22	41	Right-handed alpha
Helix 2	AA2	B	53	58	Right-handed alpha
Helix 3	AA3	B	61	66	Right-handed alpha
Helix 4	AA4	B	79	94	Right-handed alpha
Helix 5	AA5	B	95	103	Right-handed alpha
Helix 6	AA6	B	104	109	Right-handed alpha
Helix 7	AA7	B	112	117	Right-handed alpha
Helix 8	AA8	B	119	129	Right-handed alpha
Helix 9	AA9	B	134	142	Right-handed alpha
Helix 10	AB1	B	145	150	Right-handed alpha
Helix 11	AB2	B	150	170	Right-handed alpha
Helix 12	AB3	B	173	183	Right-handed alpha
Helix 13	AB4	B	187	192	Right-handed alpha
Helix 14	AB5	B	195	226	Right-handed alpha
Helix 15	AB6	B	231	240	Right-handed alpha
Helix 16	AB7	B	244	274	Right-handed alpha
Helix 17	AB8	A	26	41	Right-handed alpha
Helix 18	AB9	A	53	58	Right-handed alpha
Helix 19	AC1	A	79	94	Right-handed alpha
Helix 20	AC2	A	95	104	Right-handed alpha
Helix 21	AC3	A	112	127	Right-handed alpha
Helix 22	AC4	A	134	142	Right-handed alpha
Helix 23	AC5	A	145	171	Right-handed alpha
Helix 24	AC6	A	173	183	Right-handed alpha
Helix 25	AC7	A	187	194	Right-handed alpha
Helix 26	AC8	A	194	219	Right-handed alpha
Helix 27	AC9	A	233	240	Right-handed alpha
Helix 28	AD1	A	244	274	Right-handed alpha
Helix 29	AD2	C	48	57	Right-handed alpha
Helix 30	AD3	C	94	107	Right-handed alpha
Helix 31	AD4	C	115	126	Right-handed alpha
Helix 32	AD5	C	140	155	Right-handed alpha
Helix 33	AD6	C	170	175	Right-handed alpha
Helix 34	AD7	C	177	188	Right-handed alpha
Helix 35	AD8	C	233	238	Right-handed alpha
Helix 36	AD9	C	243	269	Right-handed alpha
Helix 37	AE1	C	286	288	Right-handed 310
Helix 38	AE2	C	289	298	Right-handed alpha
Helix 39	AE3	C	299	304	Right-handed alpha
Helix 40	AE4	C	316	326	Right-handed alpha
Helix 41	AE5	C	337	343	Right-handed alpha
Helix 42	AE6	C	371	377	Right-handed alpha
Helix 43	AE7	C	380	391	Right-handed alpha
Helix 44	AE8	C	409	418	Right-handed alpha
Helix 45	AE9	C	432	443	Right-handed alpha
Helix 46	AF1	C	451	461	Right-handed alpha
Helix 47	AF2	C	486	491	Right-handed alpha
Helix 48	AF3	C	496	512	Right-handed alpha
Helix 49	AF4	C	515	523	Right-handed alpha
Helix 50	AF5	C	532	536	Right-handed 310
Helix 51	AF6	C	570	582	Right-handed alpha
Helix 52	AF7	C	592	601	Right-handed alpha
Helix 53	AF8	C	602	612	Right-handed alpha
Helix 54	AF9	C	636	642	Right-handed alpha
Helix 55	AG1	D	62	71	Right-handed alpha
Helix 56	AG2	D	109	122	Right-handed alpha
Helix 57	AG3	D	129	137	Right-handed alpha
Helix 58	AG4	D	150	154	Right-handed 310
Helix 59	AG5	D	155	170	Right-handed alpha
Helix 60	AG6	D	185	204	Right-handed alpha
Helix 61	AG7	D	213	220	Right-handed alpha
Helix 62	AG8	D	248	254	Right-handed alpha
Helix 63	AG9	D	257	270	Right-handed alpha
Helix 64	AH1	E	16	21	Right-handed alpha
Helix 65	AH2	E	22	24	Right-handed 310
Helix 66	AH3	E	66	68	Right-handed 310
Helix 67	AH4	E	69	82	Right-handed alpha
Helix 68	AH5	F	9	11	Right-handed 310
Helix 69	AH6	F	12	22	Right-handed alpha
Helix 70	AH7	F	68	81	Right-handed alpha
Helix 71	AH8	G	9	14	Right-handed 310
Helix 72	AH9	G	15	23	Right-handed alpha
Helix 73	AI1	G	66	68	Right-handed 310
Helix 74	AI2	G	69	82	Right-handed alpha

There are 17 sheets in PDB entry 8WM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	6	7	anti-parallel
Strand 3	C	66	68	anti-parallel
Strand 4	C	71	72	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	22	23	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	192	195	parallel
Strand 3	C	161	163	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	212	first strand
Strand 2	C	220	225	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	283	first strand
Strand 2	C	309	313	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	335	first strand
Strand 2	C	478	485	anti-parallel
Strand 3	C	354	356	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	335	first strand
Strand 2	C	478	485	anti-parallel
Strand 3	C	361	362	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	370	first strand
Strand 2	C	464	465	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	400	first strand
Strand 2	C	427	430	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	589	590	first strand
Strand 2	C	652	653	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	46	first strand
Strand 2	D	22	26	anti-parallel
Strand 3	D	80	83	anti-parallel
Strand 4	D	86	87	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	98	first strand
Strand 2	D	174	177	parallel
Strand 3	D	206	207	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	228	first strand
Strand 2	D	234	238	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	101	first strand
Strand 2	E	90	95	anti-parallel
Strand 3	E	2	8	anti-parallel
Strand 4	E	56	65	anti-parallel
Strand 5	E	32	36	anti-parallel
Strand 6	F	28	32	anti-parallel
Strand 7	F	59	65	anti-parallel
Strand 8	F	2	8	anti-parallel
Strand 9	F	90	95	anti-parallel
Strand 10	G	100	101	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	101	first strand
Strand 2	G	90	91	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	8	first strand
Strand 2	G	56	65	anti-parallel
Strand 3	G	29	35	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	8	first strand
Strand 2	G	56	65	anti-parallel
Strand 3	G	2	4	anti-parallel
Strand 4	G	93	95	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WM7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WM7