Analysis of interatomic Contacts of Structural Units in PDB entry:
8WM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WM8 entry

There are 4 chains in PDB entry 8WM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ASN 19GLU 277
B
 SER 14GLN 278
A
 GLN 15ASP 277
C
 THR 3ALA 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8WM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
62 71Right-handed alpha
Helix 2
AA2
D
83 86Right-handed 310
Helix 3
AA3
D
100 104Right-handed 310
Helix 4
AA4
D
109 119Right-handed alpha
Helix 5
AA5
D
126 140Right-handed alpha
Helix 6
AA6
D
155 170Right-handed alpha
Helix 7
AA7
D
185 204Right-handed alpha
Helix 8
AA8
D
216 221Right-handed alpha
Helix 9
AA9
D
256 271Right-handed alpha
Helix 10
AB1
B
15 23Right-handed alpha
Helix 11
AB2
B
26 44Right-handed alpha
Helix 12
AB3
B
55 60Right-handed alpha
Helix 13
AB4
B
61 67Right-handed alpha
Helix 14
AB5
B
80 94Right-handed alpha
Helix 15
AB6
B
95 111Right-handed alpha
Helix 16
AB7
B
112 129Right-handed alpha
Helix 17
AB8
B
130 133Right-handed 310
Helix 18
AB9
B
134 142Right-handed alpha
Helix 19
AC1
B
145 155Right-handed alpha
Helix 20
AC2
B
158 171Right-handed alpha
Helix 21
AC3
B
173 183Right-handed alpha
Helix 22
AC4
B
187 195Right-handed alpha
Helix 23
AC5
B
195 208Right-handed alpha
Helix 24
AC6
B
208 219Right-handed alpha
Helix 25
AC7
B
235 240Right-handed alpha
Helix 26
AC8
B
244 275Right-handed alpha
Helix 27
AC9
A
21 25Right-handed 310
Helix 28
AD1
A
26 44Right-handed alpha
Helix 29
AD2
A
53 60Right-handed alpha
Helix 30
AD3
A
83 88Right-handed alpha
Helix 31
AD4
A
89 94Right-handed alpha
Helix 32
AD5
A
96 109Right-handed alpha
Helix 33
AD6
A
130 133Right-handed 310
Helix 34
AD7
A
134 143Right-handed alpha
Helix 35
AD8
A
144 157Right-handed alpha
Helix 36
AD9
A
158 171Right-handed alpha
Helix 37
AE1
A
173 182Right-handed alpha
Helix 38
AE2
A
187 192Right-handed alpha
Helix 39
AE3
A
199 214Right-handed alpha
Helix 40
AE4
A
214 221Right-handed alpha
Helix 41
AE5
A
221 226Right-handed alpha
Helix 42
AE6
A
246 256Right-handed alpha
Helix 43
AE7
A
263 275Right-handed alpha
Helix 44
AE8
C
48 57Right-handed alpha
Helix 45
AE9
C
67 71Right-handed 310
Helix 46
AF1
C
94 105Right-handed alpha
Helix 47
AF2
C
111 123Right-handed alpha
Helix 48
AF3
C
142 155Right-handed alpha
Helix 49
AF4
C
172 186Right-handed alpha
Helix 50
AF5
C
198 203Right-handed alpha
Helix 51
AF6
C
233 238Right-handed alpha
Helix 52
AF7
C
240 269Right-handed alpha
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There are 4 sheets in PDB entry 8WM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 47first strand
Strand 2
D
21 30anti-parallel
Strand 3
D
80 81anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 98first strand
Strand 2
D
174 177parallel
Strand 3
D
206 210parallel
Strand 4
D
52 56parallel
Strand 5
D
224 226parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 25first strand
Strand 2
C
8 13anti-parallel
Strand 3
C
63 65anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 162first strand
Strand 2
C
193 196parallel
Strand 3
C
38 41parallel
Strand 4
C
208 211parallel
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